theislab/kBET

Issues

• Abnormal kBET Scores

  #80 opened 9 months ago by VishD17
  2

• Which kind of normalization for 10X data is perferred for kBET?

  #79 opened a year ago by Smilenone
  3

• is df input kBET a data frame with cells in rows and features in columns or the opposite?

  #77 opened a year ago by joseale2310
  3

• batch_sil with non-numeric batch codes

  #76 opened 2 years ago by jesswhitts
  1

• which cell is rejected

  #78 opened 2 years ago by wangjiawen2013
  1

• Dose kBET allow normalized matrix as input?

  #56 opened 2 years ago by yycunc
  1

• Searching for code and corresponding data.

  #74 opened 2 years ago by sksarafad
  1

• Improve input flexibility for kBET

  #69 opened 3 years ago by mbuttner
  0

• question about input matirx size

  #75 opened 2 years ago by huawen-poppy
  2

• Improve runtime of kBET

  #68 opened 3 years ago by mbuttner
  5

• High rejection rates for seemingly well integrated data

  #47 opened 5 years ago by Sum02dean
  16

• Please add license to your repository

  #72 opened 2 years ago by HollyRuess
  3

• how to assess the batch? by rejection rate or silhouette?

  #64 opened 2 years ago by elva0328
  4

• Extremely long run time

  #46 opened 2 years ago by csennis
  3

• how to calculate the max rejection rate and labeled the line in line chart

  #65 opened 2 years ago by elva0328
  2

• Using kBET for methylation and RNA-Seq data

  #66 opened 2 years ago by mxdeluca
  1

• Using kBET with AnnData object

  #71 opened 2 years ago by LeonHafner
  2

• Warning from 'if (class(knn) == "list")' in R 4.0.0

  #54 opened 3 years ago by jernest1
  5

• Add cell type label as optional argument

  #70 opened 3 years ago by mbuttner
  0

• Working on SingleCellExperiment object.

  #58 opened 3 years ago by Midsummer723
  1

• kBET for scATAC-seq data

  #55 opened 3 years ago by cflerin
  1

• High rejection rates in integrated data of lung and liver than two lung tissues

  #50 opened 3 years ago by Quan-L
  1

• Scanpy Anndata object to KBET?

  #67 opened 4 years ago by ShaowenJ
  2

• kBET documentation for batch argument

  #63 opened 4 years ago by edward130603
  2

• Error when setting nPCs to 2 in batch_sil function

  #57 opened 4 years ago by ilcink
  3

• Questions about cell type parameters.

  #61 opened 4 years ago by HelloWorldLTY
  3

• question about mean_kBET in the README subsampling section

  #62 opened 4 years ago by wiredosprout
  0

• Can I apply pandas pd as input or np.matrix as input for kBET? Thanks.

  #60 opened 4 years ago by HelloWorldLTY
  4

• Error in batch_sil() and pcRegression()

  #59 opened 4 years ago by aditisk
  0

• kBET doesn't give any output?

  #53 opened 5 years ago by getanid123
  6

• data matrix for kBET evaluation

  #49 opened 5 years ago by phoebee-h
  1

• Add a release tag

  #51 opened 5 years ago by EugOT
  1

• Seurat v3 and kBET

  #52 opened 5 years ago by rmenafra
  2

• cell x feature or feature x cell?

  #48 opened 6 years ago by jon-xu
  4

• kBET values

  #45 opened 6 years ago by vkorobeynyk
  0

• Memory

  #37 opened 7 years ago by davetang
  6

• kBET within known cluster

  #39 opened 6 years ago by AlemuTA
  2

• Seurat CCA

  #41 opened 6 years ago by alextamburino
  2

• kBET not working (?)

  #43 opened 6 years ago by SNRNS
  2

• The input data format

  #44 opened 6 years ago by nottwy
  1

• weird(opposite) result

  #42 opened 6 years ago by james20141606
  1

• data.R is missing

  #36 opened 7 years ago by wikiselev
  1

• Overall Batch Effect

  #20 opened 8 years ago by mRcSchwering
  1