quantification
There are 89 repositories under quantification topic.
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
pinellolab/CRISPResso2
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
DIPlib/diplib
Quantitative Image Analysis in C++, MATLAB and Python
COMBINE-lab/alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
theislab/kBET
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
rajewsky-lab/mirdeep2
Discovering known and novel miRNAs from small RNA sequencing data
PaulingLiu/ROGUE
Assessing the purity of single cell population
HLT-ISTI/QuaPy
A framework for Quantification written in Python
microsoft/PullRequestQuantifier
A highly customizable framework to quantify a pull request within a repository context.
songjian/cnstats
获取**国家统计局网站数据。
MannLabs/directlfq
Fast and accurate label-free quantification for small and very large numbers of proteomes
iquasere/reCOGnizer
A tool for domain based annotation with databases from the Conserved Domains Database
xu-peng-tao/SSD-Pruning-and-quantization
Pruning and quantization for SSD. Model compression.
elliotekj/DeltaE
DeltaE is a pure-Rust implementation of the CIEDE2000 algorithm
shm-unesp/DATASET_PLATEUN01
CONCEPT is a dataset of lamb-wave measured in composite structures in healthy and damaged states. This experiment was conducted at the SHM Lab from UNESP Ilha Solteira.
PavlidisLab/rnaseq-pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
lweasel/piquant
A pipeline to assess the quantification of transcripts.
smith-chem-wisc/FlashLFQ
Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
nf-core/dualrnaseq
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
bkrem/quanti-team
:link: A TenderMint blockchain API to make collaborative work measurable & quantifiable
nf-core/metaboigniter
Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
comprna/ORQAS
ORF Quantification pipeline for Alternative Splicing
smith-chem-wisc/ProteoformSuite
Construction, quantification, and visualization of proteoform families
cpanse/protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
AICGijon/quantificationlib
QuantificationLib is an open-source library for quantification learning.
ElisabethKugler/ZFVascularQuantification
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
mchevalier2/crestr
A R package to apply the climate reconstruction CREST.
bigbio/ibaqpy
Absolute quantification package based on quantms.io
erdogant/flameplot
flameplot is a python package for the quantification of local similarity across two maps or embeddings.
rohitsuratekar/CardioPipeLine
Pipeline for RNA-seq analysis
sulaimanvesal/CardiacQuanNet
[IEEE-JBHI 2020] TensorFlow/Keras implementation: Spatio-temporal Multi-task Learning for Cardiac MRI Left Ventricle Quantification
vcangadi1/EELSAnalyser
EELSAnalyser is a EELS data analysis tool written in MATLAB. Contact : Veer.Angadi@brunel.ac.uk
Cai-Lab-at-University-of-Michigan/nGauge
A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.
ElisabethKugler/GliaMorph
#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology
snimmagadda1/PD-and-ET-Tremor-Quantification
🏥 Quantification of Parkinsonian and Essential Tremor using a novel, bluetooth-integrated accelerometer based system
SBCSnicholsLab/pseudogene_quantification
Repo accompanying our manuscript on quantifying extra-nuclear inserts from population-level low-pass sequencing data