pinellolab/CRISPResso2

Issues

• Quantify my guides based on a trimmed fastq file

  #481 opened 3 months ago by yeroslaviz
  0

• CRISPRessoAggregate failure

  #469 opened 4 months ago by enc-kcotto
  4

• amplicon for Targeted Sequencing

  #475 opened 3 months ago by tangxj98
  0

• http://crispresso2.pinellolab.org/ - 502 Bad gateway

  #463 opened 4 months ago by mahmud2236
  2

• CRISPResso2 breaks because on lack of pin in matplotlib version

  #455 opened 4 months ago by matandro
  3

• @N-yating If you pin to Python 2.7, it will install an old version of CRISPResso2. I would recommend using Python 3 for the most recent version of CRISPResso2.

  #450 opened 4 months ago by N-yating
  0

• --output-bam does not work with docker version

  #363 opened 5 months ago by niko-balanis
  3

• Confused about sequence directions in prime editing parameters

  #426 opened 5 months ago by francoiskroll
  6

• Numpy Error

  #447 opened 5 months ago by ahrimj21
  6

• ERROR：HDR number in the plot not the same as the number in txt file

  #448 opened 5 months ago by Masterchiefm
  2

• High % of "AMBIGUOUS" reads – what are they?

  #446 opened 5 months ago by francoiskroll
  3

• Error message: alignment amplicon sequence to reads

  #441 opened 6 months ago by dbudinger
  3

• Question about CRISPResso for WGS - and potential feature

  #442 opened 5 months ago by tanyasarkjain
  1

• A small mistake in 'CRISPResso_quantification_of_editing_frequency.txt'

  #440 opened 6 months ago by lpcv0309
  1

• ERROR: NUMPY RELATED

  #437 opened 6 months ago by ZhongxuanZhang
  1

• CRISPRessoAgregate

  #435 opened 6 months ago by xguo-nveloptx
  0

• ERROR: Offset around cut would be greater than reference sequence length.

  #433 opened 7 months ago by albustruong
  2

• Alleles frequency table plot not generated

  #405 opened 7 months ago by JNWorkman
  3

• Allele plot doesn't show base letter

  #420 opened 8 months ago by albustruong
  2

• CRIPSResso2 package not included in channel

  #411 opened 8 months ago by AnnMue
  1

• How to solve Error 0?

  #416 opened 8 months ago by ShawnYuXX
  4

• Errors thrown when giving amplicon_seq in lower case.

  #396 opened 8 months ago by francoiskroll
  0

• INDELs not recognized in the allele frequency table

  #406 opened 8 months ago by yifanzhou123
  2

• ERROR: 264 columns passed, passed data had 265 columns - Prime Editing

  #367 opened 8 months ago by mbiokyle29
  0

• Base "N" in allele frequency quilts plot

  #402 opened 8 months ago by xguo-nveloptx
  2

• custom plot script

  #401 opened 8 months ago by xguo-nveloptx
  3

• Why doesn't fig9 show base sequences

  #390 opened 8 months ago by lewislearning
  2

• CRISPResso2 cannot handle drop out deletions between two target sites, apparently

  #387 opened 9 months ago by GreenSeaBug
  1

• Install a previous version of CRISPResso 2.2.4

  #388 opened 9 months ago by Yingjie848
  1

• CRISPRessoPooled not always writing to .info file

  #377 opened 9 months ago by npklein
  3

• Allelic plot sequence not visible

  #345 opened 9 months ago by AnkushAuradkar
  11

• Calculating deletion frequency (het/hom)

  #382 opened 9 months ago by olu2016
  2

• Merge, Split, and Analyze with CRISPResso2

  #379 opened 9 months ago by modifiedplant
  3

• Annotations for alleles not appearing in allele frequency quilt plots

  #384 opened 9 months ago by JNWorkman
  5

• Alignment issues

  #383 opened 9 months ago by jsromanowski
  5

• Base edit: Conversion % in Nucleotide_conversion_map.pdf differ from conversion % in Quantification_window_nucleotide_percentage_table.txt

  #381 opened 9 months ago by tracie-mg
  1

• CRISPressoPooled takes end position of chromosome instead of next chunk

  #376 opened 9 months ago by npklein
  1

• --quantification_window_coordinates (qwc): Bug - Cannot define multiple quant windows for multiple amplicons

  #371 opened 10 months ago by enc-wmatern
  0

• ERROR: name 'chr_end' is not defined

  #374 opened 10 months ago by npklein
  0

• Visualization and quantification of two insertions within an amplicon.

  #372 opened 10 months ago by yxwvutt
  1

• Prime Editing Issue: Unexpected sgRNA Cutting within Amplicon

  #368 opened 10 months ago by CharlotteMarasigan
  1

• Setting threshold for number of reads for a confident call

  #365 opened a year ago by olu2016
  2

• https is not working

  #366 opened a year ago by nephantes
  1

• Understanding the modified/unmodified percentages in alignment pie chart

  #360 opened a year ago by olu2016
  2

• Visualisation help required

  #359 opened a year ago by olu2016
  2

• CRISPRessoPooled - ERROR: The amplicon sequences must be distinct! (Duplicated entries:

  #355 opened a year ago by olu2016
  4

• CRISPRessoPooled with --alternate_alleles

  #358 opened a year ago by GreenSeaBug
  2

• Substitutions and N's outside quantification window counted in alleles frequency table

  #356 opened a year ago by GreenSeaBug
  8

• sgRNA sequence contains bad characters

  #354 opened a year ago by olu2016
  4

• Unable to install crispresso with conda

  #350 opened a year ago by Mettl16
  1