wikiselev

NGS data analysis, pipelines, cloud infrastructure, automations, web apps, databases, target identification, single-cell, statistics, machine learning

AlethiomicsCambridge, UK

Pinned Repositories

rnaseq
Fast RNAseq pipeline
Language:Groovy10 2 04
SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
Language:R119 11 9655
scmap
A tool for unsupervised projection of single cell RNA-seq data
Language:R89 12 3811
scRNA.seq.course
Analysis of single cell RNA-seq data course
Language:TeX673 62 61360
kubespray
Deploy a Production Ready Kubernetes Cluster
Language:Jinja16.2k 310 4.1k6.5k
nextflow
A DSL for data-driven computational pipelines
Language:Groovy2.8k 88 3.3k634
bioinformatics-algorithms
Simple but essential bioinformatics algorithms
Language:R4 0 01
coursera-bioinformatics-algorithms
4 1 011
rnaseq.mcf10a
"Perturbations of PIP3 signalling" paper
Language:R2 0 02
SC3-old
An interactive tool for the unsupervised clustering of cells from single cell RNA-Seq experiments.
Language:R8 1 00

wikiselev's Repositories

wikiselev/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
1 0 02
wikiselev/datasite
Language:Python1 1 0
wikiselev/datasite-frontend
Language:TypeScript1 1 0
wikiselev/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
Language:Nextflow1 0 0
wikiselev/scfind
Language:C++1 0 0
wikiselev/scRNA.seq.course
Analysis of single cell RNA-seq data course
Language:TeX1 0 0
wikiselev/aws-js-s3-explorer
AWS JavaScript S3 Explorer is a JavaScript application that uses AWS's JavaScript SDK and S3 APIs to make the contents of an S3 bucket easy to browse via a web browser.
Language:HTML0 0
wikiselev/batchbench
Language:R0 0
wikiselev/BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
Language:R0 0
wikiselev/chords
My collection of songs I like to sing
Language:Shell0 01
wikiselev/DNAbarcodes
Simple generator of DNA barcodes for sequencing experiments
Language:Python0 0
wikiselev/dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
Language:C++0 0
wikiselev/ftl1.support
Web page to support FTL1, Saratov, Russia
Language:HTML0 0
wikiselev/harmony
Scalable integration of single cell RNAseq data for batch correction and meta analysis
Language:Jupyter Notebook0 0
wikiselev/hugo-academic
The personal website framework for Hugo. Demo at
Language:HTML0 0
wikiselev/installations
Scripts for software installations for a new Mac
Language:Shell1 0
wikiselev/jenkins-github-test
Language:Shell0 1
wikiselev/kubespray
Setup a kubernetes cluster
Language:Python0 0
wikiselev/ms-identity-python-webapp
A Python web application calling Microsoft graph that is secured using the Microsoft identity platform
Language:PowerShell0 0
wikiselev/nextflow
A DSL for data-driven computational pipelines
Language:Groovy0 0
wikiselev/nextflow-idioms
Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.
Language:Nextflow0 0
wikiselev/nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow0 0
wikiselev/ramdaq_bcl2fastq
Language:Nextflow0 0
wikiselev/rnaseq-nf
A proof of concept of RNAseq pipeline
0 0
wikiselev/roccl.org.uk
A website for the Orthodox Parish of St Alban, Luton, UK
Language:JavaScript0 0
wikiselev/saintephraim.org.uk
A website for the Orthodox Parish of St Ephraim, Cambridge, UK
Language:HTML0 52
wikiselev/scater
Single cell analysis tools for expression from RNA-seq in R
Language:R0 0
wikiselev/tidyverse
Docker image for tidyverse with some extra packages
1 0
wikiselev/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
Language:Python0 01
wikiselev/wikiselev.github.io
My personal website
Language:HTML0 0