Pinned Repositories
2018-IMO-Wksp-TeamRed
Code by Team Red at the 2018 Moffitt IMO Workshop on Evolutionary Therapy
2019-IMO-Wksp-TeamRed-CRLM
Code associated with the modeling exploration of tumor board evolution in metastatic colorectal cancer with liver metastasis by Team Red at the 2019 Moffitt IMO Workshop on Tumor Board Evolutionary on November 3-8, 2019.
A2780-scRNAseq
single-cell RNAseq analysis pipeline for A2780 treatment resistance
bladder-cancer
repository for project exploring evolutionary-based therapies in bladder cancer
bulkRNAseq
analysis pipeline for bulk RNA sequencing data
cardiac-amyloidosis
repository for code for analyzing multiple myeloma patient data with and without cardiac amyloidosis diagnosis
CMML-diversity
single-cell RNA sequencing pipeline for analyzing CD34+ cells from patients with CMML
lung-cancer
developing adaptive therapy scheduling for lung cancer
OncoDiversity.jl
calculating patient diversity from VDJ CDR3 sequences recovered from patient BAM files
scRNAseq
Single cell RNAseq intratumor heterogeneity diversity quantification
mcfefa's Repositories
mcfefa/scRNAseq
Single cell RNAseq intratumor heterogeneity diversity quantification
mcfefa/DiffEqTutorials.jl
Tutorials for using the DiffEq ecosystem
mcfefa/Disease-prediction-based-on-clusters-of-expressed-transcripts-and-SNPs
mcfefa/Gillespie.jl
Stochastic Gillespie-type simulations using Julia
mcfefa/MetaCyto_Examples
Examples for MetaCyto
mcfefa/Survival.jl
Survival analysis in Julia
mcfefa/website