Pinned Repositories
2018-IMO-Wksp-TeamRed
Code by Team Red at the 2018 Moffitt IMO Workshop on Evolutionary Therapy
2019-IMO-Wksp-TeamRed-CRLM
Code associated with the modeling exploration of tumor board evolution in metastatic colorectal cancer with liver metastasis by Team Red at the 2019 Moffitt IMO Workshop on Tumor Board Evolutionary on November 3-8, 2019.
A2780-scRNAseq
single-cell RNAseq analysis pipeline for A2780 treatment resistance
bladder-cancer
repository for project exploring evolutionary-based therapies in bladder cancer
bulkRNAseq
analysis pipeline for bulk RNA sequencing data
cardiac-amyloidosis
repository for code for analyzing multiple myeloma patient data with and without cardiac amyloidosis diagnosis
CMML-diversity
single-cell RNA sequencing pipeline for analyzing CD34+ cells from patients with CMML
lung-cancer
developing adaptive therapy scheduling for lung cancer
OncoDiversity.jl
calculating patient diversity from VDJ CDR3 sequences recovered from patient BAM files
scRNAseq
Single cell RNAseq intratumor heterogeneity diversity quantification
mcfefa's Repositories
mcfefa/CMML-diversity
single-cell RNA sequencing pipeline for analyzing CD34+ cells from patients with CMML
mcfefa/lung-cancer
developing adaptive therapy scheduling for lung cancer
mcfefa/OncoDiversity.jl
calculating patient diversity from VDJ CDR3 sequences recovered from patient BAM files
mcfefa/2018-IMO-Wksp-TeamRed
Code by Team Red at the 2018 Moffitt IMO Workshop on Evolutionary Therapy
mcfefa/A2780-scRNAseq
single-cell RNAseq analysis pipeline for A2780 treatment resistance
mcfefa/bladder-cancer
repository for project exploring evolutionary-based therapies in bladder cancer
mcfefa/bulkRNAseq
analysis pipeline for bulk RNA sequencing data
mcfefa/cardiac-amyloidosis
repository for code for analyzing multiple myeloma patient data with and without cardiac amyloidosis diagnosis
mcfefa/COVID-19
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
mcfefa/QuantPhysCollabPythonHW
repository for UF BME4409 to use for their collaborative coding assignment
mcfefa/QuantPhysCollabPythonHWFa22
repository for UF BME4409 to use for their collaborative coding assignment
mcfefa/Distances.jl
A Julia package for evaluating distances (metrics) between vectors.
mcfefa/EMSI-2021
repository of lab assignments from EMSI 2021
mcfefa/GeckoScreen.jl
data analysis pipeline for sequences identified from GeCKO screens
mcfefa/github-pages-with-jekyll
mcfefa/github-slideshow
A robot powered training repository :robot:
mcfefa/github-upload
mcfefa/hypoxia-genes
comparative genomic study of hypoxia genes across a variety of mammalian species
mcfefa/markdown-portfolio
mcfefa/ML-Cell-Migration
pipeline for an automated machine learning-driven assay for robust and accessible analysis of cell migration
mcfefa/Mono-Bias-CMML-GMPs
mcfefa/OvCa-PARP-resistance
mcfefa/OvCa-PopDynamics
mcfefa/OvCa-scRNAseq-Julia
ovarian cancer treatment resistance single-cell RNAseq analysis pipeline in Julia
mcfefa/PanCan-PopDynamics
mcfefa/scATACseq
analysis pipelines for single-cell ATATseq data
mcfefa/screening-multiple-myeloma
mcfefa/test
test for quant phys
mcfefa/Theoretical-Diversity
mcfefa/TumorTIME