mcleanm's Stars
lanpa/tensorboardX
tensorboard for pytorch (and chainer, mxnet, numpy, ...)
garrettj403/SciencePlots
Matplotlib styles for scientific plotting
facebookresearch/dino
PyTorch code for Vision Transformers training with the Self-Supervised learning method DINO
jlegewie/zotfile
Zotero plugin to manage your attachments: automatically rename, move, and attach PDFs (or other files) to Zotero items, sync PDFs from your Zotero library to your (mobile) PDF reader (e.g. an iPad, Android tablet, etc.), and extract PDF annotations.
wolny/pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
arpitbansal297/Cold-Diffusion-Models
Official implementation of Cold-Diffusion for different transformations in pytorch.
generatebio/chroma
A generative model for programmable protein design
naver/roma
RoMa: A lightweight library to deal with 3D rotations in PyTorch.
MaxRobinsonTheGreat/LifeEngine
The Life Engine
probabilistic-numerics/probnum
Probabilistic Numerics in Python.
tqch/ddpm-torch
Unofficial PyTorch Implementation of Denoising Diffusion Probabilistic Models (DDPM)
phonchi/Computational-CryoEM
A curated list of awesome computational cryo-EM methods.
BioinfoMachineLearning/cryoppp
The programs of creating cryo-EM particle picking datasets
demegire/wiki-journey
Wiki Journey tracks your daily Wikipedia adventures and archives them in a tree format
mxhulab/cryosieve
vadim-za/math-intuition-book
ml-struct-bio/cryofire
Amortized inference for ab initio heterogeneous cryo-EM reconstruction
cryoem-uoft/cryosparc-tools
Python library that enables scripting access to CryoSPARC, a cryo-EM software package.
bforsbe/OccuPy
DustinMorado/EPU_group_AFIS
Makes RELION 3.1 Optics Groups from EPU AFIS data
SMLC-NYSBC/TARGET-VAE
Source code for "Unsupervised Object Representation Learning using Translation and Rotation Group Equivariant VAE," in pytorch. NeurIPS 2022
LyumkisLab/SamplingGui
GUI for analyzing Fourier space sampling in cryo-EM
hsnyder/c-serpent
Generates python wrappers for C functions
TamirBendory/CryoEMSignalEnhancement
hsnyder/EduVM
A virtual machine, assembler, and bytecode interpreter with interactive step-by-step execution; intended for teaching about how computers work
DustinMorado/CTF_Explorer
Small application for exploring aliasing effects of CTF on data collection parameters
MPI-Dortmund/sphire_classes_autoselect
Simple binary classification tool for cryo-EM and cryo-ET
wjrice/tiltgroup_wrangler
Software to divide data collected using Leginon into optics groups according to image shift
kookjookeem/kmeans-beamtilt
robertstass/ViewSelect