Pinned Repositories
IHCP-Diabetes
Peribank extraction and statistical analaysis of the association of diabetes and its treatment with cholestasis of pregnancy
Medication_name_cleaner
Takes medication lists cleans up and standardizes with spelling matches against standard DB using fuzzywuzzy etc.
PPaX
Supplementary media repository for the Prevention of Preterm Birth with Xylitol (PPaX Trial)
PPaX-Periodontal-Data
Scripts to quanify periodontal metrics for PPaX in response to review
Amniotic_fluid_tools
Scripts to help wrangle amniotic fluid metabolomic and metagenomic data
MetabolomicsPlots
This repository contains the code that was used to create Hive and PLSDA plots for a metabolomic analysis of high fat diet.
BaBs_DB
Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
kraken-biom
Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
Market_tracking
API tools for stock and index tracking/market analysis
mdsefero's Repositories
mdsefero/PPaX-Periodontal-Data
Scripts to quanify periodontal metrics for PPaX in response to review
mdsefero/IHCP-Diabetes
Peribank extraction and statistical analaysis of the association of diabetes and its treatment with cholestasis of pregnancy
mdsefero/Market_tracking
API tools for stock and index tracking/market analysis
mdsefero/MetaboliteID-Translators
Builds a master list of metabolites and translates between metabolite ID types for different metabolic data sets in order to perform pathway analysis
mdsefero/Medication_name_cleaner
Takes medication lists cleans up and standardizes with spelling matches against standard DB using fuzzywuzzy etc.
mdsefero/MetabolomicsPlots
This repository contains the code that was used to create Hive and PLSDA plots for a metabolomic analysis of high fat diet.
mdsefero/Metformin_Peribank
This repository searches an entire database for all instances and versions of either metformin or insulin to classify subjects and outcomes in pregnancy.
mdsefero/PPaX
Supplementary media repository for the Prevention of Preterm Birth with Xylitol (PPaX Trial)
mdsefero/poole
The Jekyll Butler. A no frills responsive Jekyll blog theme.
mdsefero/VBAC
Data extraction for VBAC study from peribank Database
mdsefero/Amniotic_fluid_tools
Scripts to help wrangle amniotic fluid metabolomic and metagenomic data
mdsefero/BaBs_DB
mdsefero/Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
mdsefero/sequence_parsing
Small suite of tools for editing/parsing/demultiplexing DNA sequencing files (FASTQ etc).
mdsefero/ShortbredCombine
Combine BioBakery ShortBred reports and summarize by group
mdsefero/kraken-biom
Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).