Pinned Repositories
cycontext
A Python implementation of the ConText algorithm for clinical text concept assertion using the spaCy framework
medspacy
Library for clinical NLP with spaCy.
medspacy_annotations
nlp_postprocessor
A spaCy component for executing custom logic at the end of a pipeline.
nlp_preprocessor
SpaCy component for modifying the string of a doc before tokenizing.
OHDSI_Tutorial
PyRuSH
init
QuickUMLS
System for Medical Concept Extraction
quickumls_data_building
Code for building QuickUMLS data resources from UMLS source data
sectionizer
A rule-based Python module for spitting documents into sections.
medspacy's Repositories
medspacy/medspacy
Library for clinical NLP with spaCy.
medspacy/sectionizer
A rule-based Python module for spitting documents into sections.
medspacy/cycontext
A Python implementation of the ConText algorithm for clinical text concept assertion using the spaCy framework
medspacy/OHDSI_Tutorial
medspacy/QuickUMLS
System for Medical Concept Extraction
medspacy/PyRuSH
init
medspacy/quickumls_data_building
Code for building QuickUMLS data resources from UMLS source data
medspacy/medspacy_annotations
medspacy/cycontext_old
A Python implementation of the ConText algorithm for clinical text concept assertion using the spaCy framework
medspacy/medspaCy_MedInfo_2023
Supplementary information for the medspaCy workshop presentation at MedInfo 2023 in Sydney, Australia
medspacy/nlp_preprocessor
SpaCy component for modifying the string of a doc before tokenizing.
medspacy/regex_matcher
medspacy/spaCy
💫 Industrial-strength Natural Language Processing (NLP) with Python and Cython
medspacy/target_matcher
A wrapper class for extended rule-based matching in spaCy.
medspacy/nlp_postprocessor
A spaCy component for executing custom logic at the end of a pipeline.
medspacy/med_disposition_n2c2_2022
Our solution for n2c2 2022 challenge task1 medication disposition
medspacy/medspacy_io
A collection of modules to facilitate reading text from various sources and writing to various sources.
medspacy/medspacy_plyvel
Plyvel, a fast and feature-rich Python interface to LevelDB
medspacy/pysimstring
Python Simstring bindings for Linux, OS X and Windows
medspacy/relation_extraction
Spacy components for Adverse Drug Event (ADE) clinical text processing. This work comes from University of Utah work on the n2c2 2018 and MADE 1.0 ADE data challenges.
medspacy/simstring
SimString
medspacy/spacy_tokenizer_infix
Small repo to explore options to fix spacy's infix issue
medspacy/unqlite-python
Python bindings for the UnQLite embedded NoSQL database