Pinned Repositories
CM515-course-2024
Course material for CM515, Spring 2024
2019_RNAseq_fastp
DSCI512 2019 Preprocessing and quality control with fastp
demultiplex-and-trim
Single pass through fastq data to separate sequence by index while removing it
merge-overlapping-svg-paths
For large pdf/svg images caused by multiple small svg rect elements. Merge them into svg paths.
summit-rna-seq-setup
Setup and testing for students
UTRome-trackhub
UCSC-visible genome files
meekrob's Repositories
meekrob/MEME.5.3.0.container
MEME 5.3.2 with MPI support in a Singularity Container
meekrob/DCK_RWC23_elt2_regulated_genes
meekrob/java-genomics-toolkit
Collection of scripts for working with Wiggle files and analyzing sequencing data
meekrob/Summit_RNAseq_Pipeline
An RNA-seq processing and analysis pipeline for use on the RMACC Summit compute cluster
meekrob/DK510_linux_2020
Notebook files for DSCI 512 Linux 2020
meekrob/multipleTestingShiny
Shiny app that demonstrates Multiple testing problems and solutions.
meekrob/stats_workshop_2020
Statistics workshop for the O-Nishimura lab, June 2020.
meekrob/RSummit_container
meekrob/HyperTRIBE
Software for updated version of TRIBE
meekrob/seg_c99
A version of seg with c99 compatible function declarations
meekrob/python3-container
A python3 container with latest installs to work on Summit
meekrob/topGOhuman
meekrob/DSCI512_RNAseqAnalyzers
A simple set of wrappers and tools for RNA-seq analysis. These tools were designed for the DSCI512 RNA-seq analysis class
meekrob/merge-overlapping-svg-paths
For large pdf/svg images caused by multiple small svg rect elements. Merge them into svg paths.
meekrob/2019_RNAseq_fastp
DSCI512 2019 Preprocessing and quality control with fastp
meekrob/planets_carpentry
A place to discuss the suitability of planets
meekrob/planets
meekrob/TF_Team
meekrob/Trinity-container
Recipe for Singularity Container
meekrob/biocodegroup.github.io
the website
meekrob/RNAseq_pipeline_mouse
A simple wrapper that performs quality control, genome alignment, basic format conversions, and htseq-count tabulation for paired-end RNA-seq samples using the mouse genome.
meekrob/HOT_regions
meekrob/onish-summit-pipelines
meekrob/WS263
Tracking changes on scripts to create and query wormbase gene annotations
meekrob/summit-rna-seq-setup
Setup and testing for students
meekrob/onish-sbatch
A collection of scripts, bash techniques, and data downloads for working on ChIP-seq data on a slurm batch system.
meekrob/spp
SPP - R package for analysis of ChIP-seq and other functional sequencing data
meekrob/ListExercises
Our painstaking attempt to create lists in android.
meekrob/Base5
Simple app to convert a number from base 10 to base 5.
meekrob/GitTesting
Trying to test the setup with Android Studio.