Pinned Repositories
CM515-course-2024
Course material for CM515, Spring 2024
2019_RNAseq_fastp
DSCI512 2019 Preprocessing and quality control with fastp
demultiplex-and-trim
Single pass through fastq data to separate sequence by index while removing it
merge-overlapping-svg-paths
For large pdf/svg images caused by multiple small svg rect elements. Merge them into svg paths.
summit-rna-seq-setup
Setup and testing for students
UTRome-trackhub
UCSC-visible genome files
meekrob's Repositories
meekrob/demultiplex-and-trim
Single pass through fastq data to separate sequence by index while removing it
meekrob/UTRome-trackhub
UCSC-visible genome files
meekrob/browserShotgun
meekrob/c-blenderi
Models and animations of c. elegans in Blender.
meekrob/CM508-2021
Course material for CM508-2021
meekrob/ELT-2-ChIP-revision
meekrob/ce-bigfish
Repository to automatically process C. elegans smFISH images. This repository uses PySMB to transfer data between Network-attached storage (NAS) and a remote server (Alpine). Then it uses Cellpose to detect and segment embryos on microscope images. Big-FISH is used to quantify the number of spots per cell. Data processed with Pandas. Report with R
meekrob/CM515-course-2024
Course material for CM515, Spring 2024
meekrob/CMB_seminar
meekrob/Comp-genomics-book-altuna
meekrob/cophy-treetools
Node.js utilities for performing operations on newick trees.
meekrob/DSCI510_2021
Data files for DSCI510 Lectures
meekrob/DSCI512_RNAseq_singleend
Fall 2022. DSCI512 RNA Sequencing Data Analysis. This is a pipeline to assist students with single-end RNA-seq data in their analysis
meekrob/ELT2-metanalysis
meekrob/Embryo_Intestine_scRNAseq
meekrob/Intro-to-qCMB-2022
Class work for Intro to qCMB
meekrob/js-proj-template
Startup files for js, with browserify, running with grunt
meekrob/kw-onish-elt-2
Code and data repo for ELT-2 study.
meekrob/meekrob
Who Am I?
meekrob/meekrob.github.io
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
meekrob/MozillaStudyGroupTemplate
Gather together a group to skill-share, co-work, and create community
meekrob/MunskyCollab
Scripts and data for ELT-2/7 modeling project with Munsky group
meekrob/my-resources
meekrob/my-resources-2
I usually ignore this
meekrob/OnishRDB
Osborne Nishimura R Database interface
meekrob/ParasiteXML
meekrob/SSIT
Fork of MunskyGroup's SSIT
meekrob/test-repo
New repository for qCMB class
meekrob/testRepo
meekrob/wormtools
Python tools for c. elegans bioinformatics