mehta-lab/dynamorph

Issues

• create summary results for each stage of the pipeline

  #42 opened 3 years ago by bryantChhun
  0

• Move instance segmentation module to `run_patch` CLI

  #38 opened 3 years ago by smguo
  0

• refactor intermediate data formats

  #36 opened 3 years ago by bryantChhun
  0

• create a docs folder with detailed info on each pipeline stage

  #34 opened 3 years ago by bryantChhun
  1

• enhanced parallelization

  #33 opened 3 years ago by bryantChhun
  1

• Training utilities

  #12 opened 3 years ago by smguo
  2

• Data augmentation

  #10 opened 3 years ago by smguo
  1

• Log training history

  #9 opened 3 years ago by smguo
  1

• CLI for dimensionality reduction

  #11 opened 4 years ago by smguo
  1

• Model training CLI

  #8 opened 4 years ago by smguo
  1

• Cuda error when running model inference

  #5 opened 4 years ago by smguo
  0

• support for 5D images and changing the number of channels

  #14 opened 4 years ago by smguo
  7

• Use pytorch data loader for training

  #15 opened 4 years ago by smguo
  2

• a demonstration notebook is needed

  #7 opened 4 years ago by mattersoflight
  0

• Metadata for patches

  #13 opened 4 years ago by smguo
  0

• Input data format

  #6 opened 4 years ago by smguo
  0

• how to use the pipeline

  #1 opened 4 years ago by bryantChhun
  0