Pinned Repositories
dynacontrast
Image-based phenotyping of single cells using self-supervised contrastive learning
dynamorph
Learn morphological states of dynamic cells
microDL
3D virtual staining with 2D and 2.5D U-Nets
microlith
Image simulation for microscopy and lithography systems
MM_meadowlarkLC_opensource
Open source micro-manager adapter for Meadowlark Liquid Crystal controllers.
multiSero
serological measurements from multiplexed ELISA assays
reconstruct-order
Label-free measurement of density and anisotropy from polarization-resolved images
recOrder
3D quantitative label-free imaging with phase and polarization
VisCy
computer vision models for single-cell phenotyping
waveorder
Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.
Computational Microscopy Platform (Mehta Lab), CZ Biohub's Repositories
mehta-lab/VisCy
computer vision models for single-cell phenotyping
mehta-lab/microDL
3D virtual staining with 2D and 2.5D U-Nets
mehta-lab/microlith
Image simulation for microscopy and lithography systems
mehta-lab/waveorder
Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.
mehta-lab/dynamorph
Learn morphological states of dynamic cells
mehta-lab/recOrder
3D quantitative label-free imaging with phase and polarization
mehta-lab/reconstruct-order
Label-free measurement of density and anisotropy from polarization-resolved images
mehta-lab/multiSero
serological measurements from multiplexed ELISA assays
mehta-lab/dynacontrast
Image-based phenotyping of single cells using self-supervised contrastive learning
mehta-lab/MM_meadowlarkLC_opensource
Open source micro-manager adapter for Meadowlark Liquid Crystal controllers.
mehta-lab/instantPolScope-matlab
Imaging molecular order in live cells using fluorescence polarization.
mehta-lab/miPolScope
miPolScope: rapid label-free imaging across wavelegnths
mehta-lab/.github
mehta-lab/AcqEngJ
Java-based acquisition engine for Micro-manager
mehta-lab/aicsimageio
Delayed Parallel Image Reading for Microscopy Images in Python
mehta-lab/micro-manager
Microscope control and image acquisition integrated with ImageJ.
mehta-lab/micro-manager.github.io
Micro-Manager website source
mehta-lab/mmCoreAndDevices
Micro-Manager's device control layer, written in C++
mehta-lab/napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Science
mehta-lab/napari-glyphs
mehta-lab/NDTiffStorage
N-dimensional, multiresolution file format for Micro-Manager
mehta-lab/NDViewer
N-D multichannel multiresolution image viewer for Micro-Manager
mehta-lab/octopi-research
mehta-lab/pycro-manager
Python control of micro-manager for customized data acquisition
mehta-lab/tensor-visualization
Visualization of uniaxial permittivity tensors measured with polarization microscopy in 2D and 3D space
mehta-lab/TriggerScopeMM
Micro-Manager-specific firmware for the TriggerScope