mehta-lab/recOrder

Issues

• Why is having a qt binding raising a runtime error?

  #459 opened a year ago by goanpeca
  10

• [BUG] unhashable type: 'list'

  #479 opened 4 months ago by alexleffell
  0

• [BUG] iohub version incompatibility with recorder-napari 0.4.1

  #466 opened 4 months ago by aaronalvarezcz
  2

• [FEATURE] Prototype a plate-level CLI that parallelizes with SLURM

  #476 opened 4 months ago by talonchandler
  0

• [BUG] Registered data issue A549 cells

  #472 opened 4 months ago by alishbaimran
  7

• Metadata is overwritten by consecutive reconstructions

  #474 opened 4 months ago by ziw-liu
  3

• Bump waveorder

  #470 opened 5 months ago by ziw-liu
  0

• reconstructions default to input datasets scale

  #465 opened 10 months ago by edyoshikun
  2

• Codec buffer limit error during reconstruction

  #460 opened a year ago by dsundarraman
  1

• [BUG] Background acquisition fails when MM's pixel size is not calibrated

  #462 opened a year ago by talonchandler
  0

• Appending reconstructed channels gives zero arrays

  #458 opened a year ago by Soorya19Pradeep
  5

• [FEATURE] Better scale handling through `recOrder` CLI

  #457 opened a year ago by talonchandler
  0

• Metadata race conditions prevent multi-position parallelization

  #444 opened a year ago by talonchandler
  2

• [DOCS] Biological sample contribution

  #433 opened a year ago by talonchandler
  3

• GUI warnings do not persist

  #445 opened a year ago by ziw-liu
  0

• File listening options

  #443 opened a year ago by ziw-liu
  1

• [BUG] Chunking limits

  #437 opened a year ago by talonchandler
  0

• [BUG] Rare background correction failure

  #368 opened a year ago by talonchandler
  3

• [DOCS] Clarify relation to other repos in README

  #432 opened a year ago by talonchandler
  0

• Add sample data contribution

  #370 opened a year ago by ziw-liu
  4

• Need to update the zenodo zarr files for 0.4.0

  #361 opened a year ago by edyoshikun
  4

• Rename the 'Orientation Legend' tab

  #430 opened a year ago by ziw-liu
  0

• [BUG] GUI-generated layers are incorrectly scaled

  #418 opened a year ago by talonchandler
  2

• [BUG] Birefringence overlays do not show up on top after repeated acquisitions

  #406 opened a year ago by talonchandler
  1

• [DOC] Iterate on and document data storage schema

  #371 opened a year ago by mattersoflight
  0

• Retardance reconstructions should appear in `nm`, not `um`

  #390 opened a year ago by talonchandler
  0

• [BUG] Dragging HCS plates into ome-zarr does not generate overlay

  #416 opened a year ago by talonchandler
  1

• [BUG] If PyQt5 is in your environment, recOrder will use it (causing GUI checkboxes to fail)

  #409 opened a year ago by talonchandler
  5

• Multiprocessing + slurm/bash strategy for `recOrder`

  #352 opened a year ago by talonchandler
  2

• `apply_inverse_transfer_function_cli` is not very modular, blocking multiprocessing

  #396 opened a year ago by talonchandler
  4

• Need to bump iohub version as there are issues to get info at position level

  #410 opened a year ago by edyoshikun
  1

• [BUG] `iohub info` does not work with reconstructed hcs plates

  #407 opened a year ago by talonchandler
  3

• [BUG] Browse dialogs boxes fail in PyQT6 has no QFileDialog.Options()

  #403 opened a year ago by talonchandler
  1

• Passing the voxel (z,y,x) in micrometers in zattrs per position

  #397 opened a year ago by edyoshikun
  0

• Compatibility table

  #362 opened a year ago by talonchandler
  2

• Implement multiprocessing for `apply_inv_tf`

  #389 opened a year ago by talonchandler
  1

• napari hub preview tests are failing

  #387 opened a year ago by talonchandler
  3

• Catch typos in configuration files

  #379 opened a year ago by talonchandler
  1

• Warnings related to colorspacious

  #386 opened a year ago by talonchandler
  0

• [FEATURE] display or filter the phase image such that background is black

  #369 opened 2 years ago by mattersoflight
  0

• Discussion: improve calibration state visibility?

  #367 opened 2 years ago by talonchandler
  0

• Easier way to push notes to the logs

  #366 opened 2 years ago by talonchandler
  0

• Unified logging to text files

  #365 opened 2 years ago by talonchandler
  0

• Buyer's guide

  #364 opened 2 years ago by talonchandler
  0

• Support slow lamps

  #363 opened 2 years ago by talonchandler
  0

• No simple and uniform way to visualize orientation and retardance-orientation overlays

  #348 opened 2 years ago by talonchandler
  6

• Regularizer parameters are not being passed correctly

  #351 opened 2 years ago by talonchandler
  1

• Design for the `recOrder`-`waveorder` interface

  #341 opened 2 years ago by talonchandler
  6

• Retardance + Orientation + Phase in '2D' mode has unexpected output

  #350 opened 2 years ago by talonchandler
  1

• Fix background correction path problems

  #349 opened 2 years ago by talonchandler
  2