Pinned Repositories
COMP90014_2024
COMP90016
Material assoicated with teaching the subject COMP90016
data_tidying_and_visualisation
Workshops on Pandas, data tidying, and visualisation
ggplotheatmap
An R package for making heatmaps with ggplot
MelBioInf_docs
Melbourne Bioinformatics documentation in markdown format
R-genomics
Lesson on data analysis and visualization in R for genomics
r-intro-biologists
shell-genomics
Lesson for the shell for genomics
spank-private-tmp
Slurm spank plugin to give each job private /tmp (and/or other dirs)
variant_calling_pipeline
A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framework in Python.
Melbourne Bioinformatics's Repositories
melbournebioinformatics/MelBioInf_docs
Melbourne Bioinformatics documentation in markdown format
melbournebioinformatics/r-intro-biologists
melbournebioinformatics/R-genomics
Lesson on data analysis and visualization in R for genomics
melbournebioinformatics/data_tidying_and_visualisation
Workshops on Pandas, data tidying, and visualisation
melbournebioinformatics/ggplotheatmap
An R package for making heatmaps with ggplot
melbournebioinformatics/shell-genomics
Lesson for the shell for genomics
melbournebioinformatics/spank-private-tmp
Slurm spank plugin to give each job private /tmp (and/or other dirs)
melbournebioinformatics/COMP90014_2024
melbournebioinformatics/COMP90016
Material assoicated with teaching the subject COMP90016
melbournebioinformatics/learnggplot
Learning materials for ggplot
melbournebioinformatics/COMP90014
melbournebioinformatics/COMP90014-conda
Environment settings for workshops in Algorithms in Bioinformatics
melbournebioinformatics/karaage-cluster-tools
Karaage cluster management tools
melbournebioinformatics/MelBioInf_docs_test
Test github.io changes to MelBioInf_docs
melbournebioinformatics/training-infrastructure
melbournebioinformatics/Analytics
Usage data analytics
melbournebioinformatics/Karaage3-plugins-project-application
A Project Application plugin for Karaage3. Captures some basic extra information not in the current application process.
melbournebioinformatics/python_gc_content
Example Git repository with Python code to calculate GC content of a FASTA file.
melbournebioinformatics/COMP90016-envs
Environment config settings for COMP90016 workshops and assignments.
melbournebioinformatics/datacarpentry_2015-11-23_VLSCI
melbournebioinformatics/galaxy-datatypes-talk
10 Minute Intro to Galaxy Datatypes
melbournebioinformatics/gitgood
melbournebioinformatics/karaage-test
Debian packaging tests for Karaage 3.x
melbournebioinformatics/keps
Karaage Enhancement Proposals
melbournebioinformatics/OpenRefine-ecology
Lesson on OpenRefine for ecology
melbournebioinformatics/python-alogger
Library to parse cluster resource manager logs.
melbournebioinformatics/python-tldap
High level LDAP library with client side transaction support.
melbournebioinformatics/R_gc_content
Example Git repository with R code to calculate GC content of a FASTA file.
melbournebioinformatics/Seurat_DE_Workshop
melbournebioinformatics/spreadsheet-ecology-lesson
This repository contains Data Carpentry lessons on using spreadsheets for data wrangling.