meren
Professor, member of the @merenlab.
Helmholtz Institute for Functional Marine BiodiversityOldenburg, Germany
Pinned Repositories
anchor-trimmer
Anchor trimming program for bacterial amplicon sequences.
anvio
An analysis and visualization platform for 'omics data
anvio-methods-paper-analyses
Some of the batch and R scripts to generate figures and stuff.
BLAST-filtering-pipeline
A very simple BLAST filtering pipeline
hmp-oral-microbiota
Some data files and scripts for our oligotyping analysis of human oral microbiota.
meren's Repositories
meren/BLAST-filtering-pipeline
A very simple BLAST filtering pipeline
meren/anvio
An analysis and visualization platform for 'omics data
meren/hmp-oral-microbiota
Some data files and scripts for our oligotyping analysis of human oral microbiota.
meren/anchor-trimmer
Anchor trimming program for bacterial amplicon sequences.
meren/anvio-methods-paper-analyses
Some of the batch and R scripts to generate figures and stuff.
meren/BEAR
A Better Sequencing Simulator for Metagenomics
meren/GEXF-generator
Generate XML formatted GEXF files for Gephi
meren/GhostKoalaParser
Parser for Ghost Koala
meren/kablammo
BLAST results visualization tool
meren/MED-Paper-Figure-6
A bunch of embarrassing ad-hoc python scripts to generate the alluvial diagram
meren/meren-lab-tools
meren/meren.github.io
http://meren.org
meren/mOTUlizer
Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
meren/PhageBoost
Rapid discovery of novel prophages using biological feature engineering and machine learning
meren/aiopg
aiopg is a library for accessing a PostgreSQL database from the asyncio
meren/bin-sequences-by-first-50
Takes FASTA as an argument, create some useless stats.
meren/BinSanity
Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation
meren/bioconda-recipes
Conda recipes for the bioconda channel.
meren/EBAME18
Long read metagenomics practical at EBAME18
meren/ebov
Ebola virus surveillance
meren/gff_parser
Parser to add external gene calls and functional annotation from Prokka to Anvi'o.
meren/ggplot2
An implementation of the Grammar of Graphics in R
meren/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
meren/pommunity
A tool to produce sequences with Roche/454 errors to create realistic pseudo-microbial communities.
meren/primer-shift-experiment
meren/radpress
A simple blog engine written in Django.
meren/rails
Ruby on Rails
meren/rp-award.github.io
Research Parasite Award Website
meren/smhasher
Automatically exported from code.google.com/p/smhasher