Pinned Repositories
anvio
An analysis and visualization platform for 'omics data
anvio.org
The anvi'o community web page
anviserver
The code behind anvi'server
illumina-utils
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
MerenLab-workflows
A repository with scripts to run pipeline that are commonly used in the Meren Lab
merenlab.org
Web content for Meren Lab
oligotyping
Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
reads-for-assembly
Simulate metagenomic short reads from one or more populations.
tRNA-seq-tools
world-map-r
A simple script to display stuff on a world map with R and ggplot
merenlab's Repositories
merenlab/anvio
An analysis and visualization platform for 'omics data
merenlab/illumina-utils
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
merenlab/oligotyping
Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
merenlab/reads-for-assembly
Simulate metagenomic short reads from one or more populations.
merenlab/world-map-r
A simple script to display stuff on a world map with R and ggplot
merenlab/MerenLab-workflows
A repository with scripts to run pipeline that are commonly used in the Meren Lab
merenlab/merenlab.org
Web content for Meren Lab
merenlab/tRNA-seq-tools
merenlab/anviserver
The code behind anvi'server
merenlab/anvio.org
The anvi'o community web page
merenlab/google-scholar-parser
A set of Python utilities to parse Google Scholar data
merenlab/SAAV-structural-mapping
Map single amino acid variants onto protein structures. Modus operandi: explore relationships between genetic variation and structural biology.
merenlab/barhal-bot
Our little Slack Bot that helps us keep an eye on our server
merenlab/homebrew-anvio
merenlab/mentorship-survey-workflow
merenlab/public-marine-omics-metadata
Semi-curated metadata for marine metagenomes (and other 'omics data types)
merenlab/BSD-QBio3
BSD Bootcamp on Quantitative Biology 3
merenlab/BSD-QBio4
Fourth BSD Quantitative Biology Bootcamp @ MBL
merenlab/clusterize
The most basic SLURM wrapper
merenlab/CONCOCT
Clustering cONtigs with COverage and ComposiTion
merenlab/gff_parser
Parser to add external gene calls and functional annotation from Prokka to Anvi'o.