Issues
- 0
Move to Eytzinger layout
#989 opened by aarmey - 0
- 1
Cross validation as model selection
#893 opened by Farnazmdi - 8
importing the new lineage data
#876 opened by Farnazmdi - 0
cell barcoding computational experiment
#855 opened by Farnazmdi - 1
Some figure-related issues from reviewer comments
#856 opened by Farnazmdi - 0
JOSS submission
#708 opened by aarmey - 0
Issue for Sean's comments
#709 opened by aarmey - 1
Change over all figures
#789 opened by aarmey - 3
Figures S11, S12, S13 have inconsistent capitalization
#791 opened by aarmey - 0
Post a purely computational preprint?
#664 opened by aarmey - 1
population-level graph of cell states over time
#752 opened by Farnazmdi - 1
- 1
figure 8 and 9 are different each time we run
#704 opened by Farnazmdi - 1
- 0
tests and some figures fail for a new assertion
#732 opened by Farnazmdi - 0
- 3
Further refine dealing with dead cells
#648 opened by aarmey - 2
adjust dof for AIC after merging at once PR.
#710 opened by Farnazmdi - 1
What would fitting cells to a Hill equation look like?
#650 opened by aarmey - 0
First make sure you are writing the linear constrain correctly before applying that in the estimator
#705 opened by Farnazmdi - 1
- 0
Manuscript tables should be in markdown
#689 opened by aarmey - 1
need to make Graphviz work with the tHMM package
#629 opened by aarmey - 2
We should show a baseline on the Wasserstein plots
#662 opened by aarmey - 0
identify the state of the cells in the excel sheets
#645 opened by Farnazmdi - 0
Strange Behavior in figures S04 and S05
#653 opened by jclagarde - 1
Pass around cell indices, not the cells themselves
#659 opened by aarmey - 2
Fixed Random seed somewhere
#638 opened by Farnazmdi - 3
- 1
setting a random seed to generate figures (mostly for figure4, but doesn't hurt to have for others, too)
#631 opened by Farnazmdi - 0
- 6
Figure 4 edits
#615 opened by aarmey - 1
Fix figure 1
#598 opened by Farnazmdi - 3
fig5 cartoon placement
#595 opened by Farnazmdi - 0
- 4
figure 10 is not in the main or supp figures yet
#588 opened by Farnazmdi - 3
the dimensions or gridsize in some supp figures are different from one another
#586 opened by Farnazmdi - 6
remaining issue 9/24-9/31
#564 opened by Farnazmdi - 0
Figure 10 poor performance
#582 opened by aarmey - 0
Speed up the estimator
#578 opened by aarmey - 7
AIC code is still not right
#531 opened by aarmey - 0
Add benchmark to Fig. 6
#551 opened by aarmey - 4
Adjust figure tagging in manuscript
#560 opened by jclagarde - 3
Rather than comparing the individual parameters of Gamma dist, use distance metric
#532 opened by aarmey - 0
The x-axis of the pi accuracy plots should be number of lineages, not number of cells
#547 opened by aarmey - 0
Poor estimation when using cell cycle phase emissions
#520 opened by aarmey - 0
Simplify cartoon figures
#533 opened by aarmey - 0
- 1