Pinned Repositories
contiguator-webapp
CONTIGuator web server
2017_python_course
Intermediate python programming course 🐍🏫
2018koyeast
Analysis of multiple yeast strains whole-genome knockout libraries 🔬📈
abstractFFT
"Abstract" paintings using Fourier transform tricks 🎨🖥️
chembl_tools
Small scripts to make the most of the ChEMBL API
nuncha
Music with a Wii nunchuck 🎮🎶
pdb2uniprot
Convert PDB residues to their Uniprot equivalents
pyseer
SEER, reimplemented in python 🐍🔮
python_plotting_snippets
Tips and tricks for plotting in python
2021_ecoli_pathogenicity
Bacterial GWAS for E. coli BSI genetic determinants
mgalardini's Repositories
mgalardini/pyseer
SEER, reimplemented in python 🐍🔮
mgalardini/python_plotting_snippets
Tips and tricks for plotting in python
mgalardini/pdb2uniprot
Convert PDB residues to their Uniprot equivalents
mgalardini/chembl_tools
Small scripts to make the most of the ChEMBL API
mgalardini/2017_python_course
Intermediate python programming course 🐍🏫
mgalardini/abstractFFT
"Abstract" paintings using Fourier transform tricks 🎨🖥️
mgalardini/2016_python_course
Material for the EBI predocs course on python
mgalardini/2018_ecoli_pathogenicity
Highlight genetic determinants of E. coli's pathogenicity
mgalardini/pangenome_variation
Run several analysis on bacterial genomes
mgalardini/ecopredict
Code for growth phenotypes prediction in E. coli and manuscript figures generation
mgalardini/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
mgalardini/reads2transcriptome
From second generation sequencing reads to base counts
mgalardini/2018koyeast
Analysis of multiple yeast strains whole-genome knockout libraries 🔬📈
mgalardini/2019_ecoli_trascriptome
Analysis of E. coli transcriptomics data 📝📊
mgalardini/2021_python_course
mgalardini/2022_ecoli_commensal
Bacterial wg-GWAS for the detection of E. coli BSI and commensal genetic determinants
mgalardini/bioconda-recipes
Conda recipes for the bioconda channel.
mgalardini/combat.py
python / numpy / pandas / patsy version of ComBat for removing batch effects.
mgalardini/dpu
Data Processing Unit for eVOLVER
mgalardini/evolver-electron
mgalardini/genomeDCA
mgalardini/glmnet_python
mgalardini/Iris
Iris: expanding the palette of microbial phenotypic readouts
mgalardini/loq
talk to type
mgalardini/mastodon_digest
A Python script that aggregates recent popular tweets from your Mastodon timeline
mgalardini/panaroo
An updated pipeline for pangenome investigation
mgalardini/project-template
Template for a computational project using python, snakemake and jupyter notebooks
mgalardini/Roary
Rapid large-scale prokaryote pan genome analysis
mgalardini/screenings
Chemical genetic data analysis pipeline
mgalardini/seer_pipeline
Run SEER with fewer headaches