mghotbi
Ph.D. in Microbial Ecology and Molecular Biology of the Rhizosphere. Currently Postdoc scholar at the Dept of Biology, MTSU
MTSUTennessee
Pinned Repositories
anvio
An analysis and visualization platform for 'omics data
BiG-SCAPE
Similarity networks of biosynthetic gene clusters
Bioinformatics
Scripts for transforming GBS data to analyses
CONCOCT
Clustering cONtigs with COverage and ComposiTion
DspikeIn
The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
Normalization
Normalize the coverage values by dividing by the size of the metagenome and the contig length
QIIME-compatible-database
QIIME-Compatible Database
Rhizosphere-Nitrogen-Fate
Processed data and R codes Relevant to Management and rhizosphere microbial associations modulate genetic-driven nitrogen fate
The-little-things
The-little-things consists of several functions, all relevant to microbiome analyses, and is user-friendly for phyloseq users
verkko
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
mghotbi's Repositories
mghotbi/DspikeIn
The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
mghotbi/Rhizosphere-Nitrogen-Fate
Processed data and R codes Relevant to Management and rhizosphere microbial associations modulate genetic-driven nitrogen fate
mghotbi/anvio
An analysis and visualization platform for 'omics data
mghotbi/BiG-SCAPE
Similarity networks of biosynthetic gene clusters
mghotbi/Normalization
Normalize the coverage values by dividing by the size of the metagenome and the contig length
mghotbi/QIIME-compatible-database
QIIME-Compatible Database
mghotbi/verkko
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
mghotbi/The-little-things
The-little-things consists of several functions, all relevant to microbiome analyses, and is user-friendly for phyloseq users
mghotbi/Bioinformatics
Scripts for transforming GBS data to analyses
mghotbi/CONCOCT
Clustering cONtigs with COverage and ComposiTion
mghotbi/EasyMetagenome
Easy Metagenome Pipeline
mghotbi/highlight.js
JavaScript syntax highlighter with language auto-detection and zero dependencies.
mghotbi/MAG_combined
Combined MAG profiling
mghotbi/rpackages
R package development - the Leek group way!
mghotbi/Workshop-DigitalSoilMappingwithR
Materials and codes of the digital soil mapping workshop which was held at the Iranian Soil & Water Research Institute.
mghotbi/gdm
R package for Generalized Dissimilarity Modeling
mghotbi/ggpicrust2
Make Picrust2 Output Analysis and Visualization Easier
mghotbi/kingfisher-download
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
mghotbi/Landsat-LAI
Employing a data-driven approach to generate Leaf Area Index (LAI) maps from Landsat images over CONUS
mghotbi/latex_paper_writing_tips
Tips for Writing a Research Paper using LaTeX
mghotbi/Metatranscriptome-Workshop
Metatranscriptomics Tutorial
mghotbi/ML-For-Beginners
12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all
mghotbi/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
mghotbi/PolygenicAdaptationCode
mghotbi/sangeranalyseR
functions to analyse sanger sequencing reads in R
mghotbi/treeio
:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output