Pinned Repositories
django-personal-website
Template for making a personal website using django. Includes set up of a home page and publications page. Instructions given on how to create additional pages and how to serve it from Amazon.
docker-reproducibility-example
Example of providing a docker container for reproducible analyses
docker-rstudio-server
Docker container that runs rstudio server
ipywidgets
Static Widgets for IPython Notebooks
itable
Make pretty tables in IPython notebooks
lobstr-code
lobSTR: a short tandem repeat profiler for next generation sequencing data
mgymrek-thesis
Melissa Gymrek's MIT PhD Thesis
pybamview
Browser based application for viewing bam alignments
pybeeswarm
Beeswarm plots for python
mgymrek's Repositories
mgymrek/pybamview
Browser based application for viewing bam alignments
mgymrek/lobstr-code
lobSTR: a short tandem repeat profiler for next generation sequencing data
mgymrek/pybeeswarm
Beeswarm plots for python
mgymrek/itable
Make pretty tables in IPython notebooks
mgymrek/docker-rstudio-server
Docker container that runs rstudio server
mgymrek/docker-reproducibility-example
Example of providing a docker container for reproducible analyses
mgymrek/mgymrek-thesis
Melissa Gymrek's MIT PhD Thesis
mgymrek/ipywidgets
Static Widgets for IPython Notebooks
mgymrek/mgymrek.github.io
mgymrek/estrs
All code and data for the study "Abundant contribution of short tandem repeats to gene expression variation in humans"
mgymrek/aws-examples
Examples of using AWS interface
mgymrek/Basset
Convolutional neural network analysis for predicting DNA sequence activity.
mgymrek/bcbb
Incubator for useful bioinformatics code, primarily in Python and R
mgymrek/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
mgymrek/docker-basset
Docker for using @davek44's Basset
mgymrek/dockers-for-dev
Docker containers for tool development
mgymrek/ebola-music-challenge
Website for the Ebola Music Challenge
mgymrek/gymreklab.github.io
jekyll starter theme w/ bootstrap (sass version)
mgymrek/HipSTR
Genotype and phase short tandem repeats using whole-genome sequencing data
mgymrek/joss
The Journal of Open Source Software
mgymrek/mgymrek-bitesizebio-webinar
Tools for analyzing genetic variants from sequencing data. Case study: short tandem repeats
mgymrek/mgymrek-sigma-hetchip
mgymrek/mpld3
D3 Renderings of Matplotlib Graphics
mgymrek/MUTEA
Python package to simulate and estimate Y-STR mutation models
mgymrek/non-coding-annotations
Various scripts for annotating non-coding variants
mgymrek/PyVCF
A Variant Call Format reader for Python.
mgymrek/scipy
Scipy library main repository
mgymrek/str-constraint
Measuring constraint at STRs
mgymrek/twin-coding
Coding exercises with my twin!
mgymrek/ubiquitousgenomics
Columbia class of 2015