mgymrek/pybamview

Issues

• Possible Remote Code Execution Vulnerability

  #52 opened 6 years ago by tch1bo
  0

• I have a problem using pybamview.

  #51 opened 8 years ago by kds135
  2

• Look for index as either file.bai or file.bam.bai

  #44 opened 9 years ago by mgymrek
  2

• Extremely high coverage loci

  #48 opened 9 years ago by mgymrek
  0

• Look into using pyfaidx instead of pyfasta

  #37 opened 9 years ago by mgymrek
  1

• paired-end

  #40 opened 10 years ago by kspham
  1

• On using Flask Blueprints

  #35 opened 10 years ago by robinandeer
  6

• add arrows for jumping navigation

  #4 opened 10 years ago by mgymrek
  1

• Handle fasta files with extra information in chromosome names

  #16 opened 10 years ago by mgymrek
  1

• Add option to use a single specified bam rather than an entire directory

  #24 opened 10 years ago by mgymrek
  1

• Remove pandas dependency

  #30 opened 10 years ago by mgymrek
  1

• Improve the default region first displayed

  #27 opened 10 years ago by laserson
  3

• "." in read groups breaks

  #25 opened 10 years ago by mgymrek
  2

• Version tags for 1.0.4 and 1.0.5

  #22 opened 10 years ago by jrandall
  1

• Fail nicely with invalid BAM headers

  #15 opened 11 years ago by mgymrek
  1

• Add feature to render output as PDF

  #9 opened 11 years ago by mgymrek
  1

• load by sample rather than by bam

  #13 opened 11 years ago by mgymrek
  1

• make sample headers scroll with alignments

  #10 opened 11 years ago by mgymrek
  2

• Add support for annotating simple variants from an input VCF file

  #11 opened 11 years ago by mgymrek
  0

• ParseCigar for c in cigar: TypeError: 'NoneType' object is not iterable

  #7 opened 11 years ago by trickytank
  2

• Handle all CIGAR cases.

  #3 opened 11 years ago by mgymrek
  3

• Only works when installed using "sudo python setup.py install".

  #2 opened 11 years ago by mgymrek
  2

• highlight positions not matching the reference

  #5 opened 11 years ago by mgymrek
  1

• Alignment scrolling jumps when scrolling past insertions

  #1 opened 11 years ago by mgymrek
  1