the
Closed this issue · 2 comments
Hello,
I have met with a problem when I install this software, that is "make" commond, and the process of make has failed.
the error as follow:
make all-recursive
make[1]: Entering directory '/home/XiaominYang/biosoftware/lobSTR-4.0.6'
Making all in m4
make[2]: Entering directory '/home/XiaominYang/biosoftware/lobSTR-4.0.6/m4'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/XiaominYang/biosoftware/lobSTR-4.0.6/m4'
Making all in src
make[2]: Entering directory '/home/XiaominYang/biosoftware/lobSTR-4.0.6/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I../src/ -I../ -I/usr/local/include -I/usr/local/include -g -O2 -Wall -Wextra -Wswitch-default -Wno-strict-aliasing -pthread -D_GIT_VERSION=""4.0.6"" -D_MACHTYPE=""x86_64"" -I/usr/include -MT liblobstr_a-AlignmentUtils.o -MD -MP -MF .deps/liblobstr_a-AlignmentUtils.Tpo -c -o liblobstr_a-AlignmentUtils.o test -f 'AlignmentUtils.cpp' || echo './'AlignmentUtils.cpp
mv -f .deps/liblobstr_a-AlignmentUtils.Tpo .deps/liblobstr_a-AlignmentUtils.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../src/ -I../ -I/usr/local/include -I/usr/local/include -g -O2 -Wall -Wextra -Wswitch-default -Wno-strict-aliasing -pthread -D_GIT_VERSION=""4.0.6"" -D_MACHTYPE=""x86_64"" -I/usr/include -MT liblobstr_a-BamFileReader.o -MD -MP -MF .deps/liblobstr_a-BamFileReader.Tpo -c -o liblobstr_a-BamFileReader.o test -f 'BamFileReader.cpp' || echo './'BamFileReader.cpp
mv -f .deps/liblobstr_a-BamFileReader.Tpo .deps/liblobstr_a-BamFileReader.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../src/ -I../ -I/usr/local/include -I/usr/local/include -g -O2 -Wall -Wextra -Wswitch-default -Wno-strict-aliasing -pthread -D_GIT_VERSION=""4.0.6"" -D_MACHTYPE=""x86_64"" -I/usr/include -MT liblobstr_a-BamPairedFileReader.o -MD -MP -MF .deps/liblobstr_a-BamPairedFileReader.Tpo -c -o liblobstr_a-BamPairedFileReader.o test -f 'BamPairedFileReader.cpp' || echo './'BamPairedFileReader.cpp
mv -f .deps/liblobstr_a-BamPairedFileReader.Tpo .deps/liblobstr_a-BamPairedFileReader.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../src/ -I../ -I/usr/local/include -I/usr/local/include -g -O2 -Wall -Wextra -Wswitch-default -Wno-strict-aliasing -pthread -D_GIT_VERSION=""4.0.6"" -D_MACHTYPE=""x86_64"" -I/usr/include -MT liblobstr_a-BWAReadAligner.o -MD -MP -MF .deps/liblobstr_a-BWAReadAligner.Tpo -c -o liblobstr_a-BWAReadAligner.o test -f 'BWAReadAligner.cpp' || echo './'BWAReadAligner.cpp
mv -f .deps/liblobstr_a-BWAReadAligner.Tpo .deps/liblobstr_a-BWAReadAligner.Po
g++ -DHAVE_CONFIG_H -I. -I.. -I../src/ -I../ -I/usr/local/include -I/usr/local/include -g -O2 -Wall -Wextra -Wswitch-default -Wno-strict-aliasing -pthread -D_GIT_VERSION=""4.0.6"" -D_MACHTYPE=""x86_64"" -I/usr/include -MT liblobstr_a-common.o -MD -MP -MF .deps/liblobstr_a-common.Tpo -c -o liblobstr_a-common.o test -f 'common.cpp' || echo './'common.cpp
common.cpp: In function 'bool fexists(const char*)':
common.cpp:195:10: error: cannot convert 'std::ifstream {aka std::basic_ifstream}' to 'bool' in return
return ifile;
^~~~~
Makefile:1954: recipe for target 'liblobstr_a-common.o' failed
make[2]: *** [liblobstr_a-common.o] Error 1
make[2]: Leaving directory '/home/XiaominYang/biosoftware/lobSTR-4.0.6/src'
Makefile:441: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/home/XiaominYang/biosoftware/lobSTR-4.0.6'
Makefile:373: recipe for target 'all' failed
make: *** [all] Error 2
Any help would be greatly appreciated!!
LobSTR is not actively being supported. I encourage you to check out HipSTR: http://github.com/tfwillems/hipstr which is a more updated tool and performs the same STR genotyping task.
LobSTR is not actively being supported. I encourage you to check out HipSTR: http://github.com/tfwillems/hipstr which is a more updated tool and performs the same STR genotyping task.