michabirklbauer/internal_ions

Issues

• Duplicated spectra in spectrum-centric dataframe

  #48 opened 9 months ago by veitveit
  4

• psm['spectrum_id'] is not integer with pepxml

  #59 opened 6 months ago by levitsky
  0

• KeyError: 'rtinseconds'

  #58 opened 6 months ago by levitsky
  0

• Add ruler for threshold of identification score in 2nd tab

  #57 opened 6 months ago by veitveit
  0

• Option to download figures or generate report

  #56 opened 7 months ago by michabirklbauer
  0

• Use cases for showing the power of internal ions

  #34 opened a year ago by veitveit
  6

• Cannot go back to manual input in the Fraggraph tab

  #55 opened 7 months ago by louisebuur
  1

• Running fragment explorer with ProteomeTools files fails

  #46 opened 7 months ago by louisebuur
  4

• Filtering options for spectrum-centric and fragment-centric views

  #49 opened 7 months ago by veitveit
  3

• Error for large fragment-centric table

  #51 opened 7 months ago by veitveit
  3

• Reading MaxQuant files fail

  #47 opened 7 months ago by louisebuur
  0

• Add charge state to spectrum-centric table

  #50 opened 9 months ago by veitveit
  1

• Fragannot results

  #20 opened 8 months ago by michabirklbauer
  2

• Seperate documentation tab

  #30 opened a year ago by carolinelennartsson
  4

• Decide on figures for visualization in Tab 2

  #3 opened a year ago by michabirklbauer
  2

• Error reading mgf file

  #40 opened 9 months ago by veitveit
  4

• Add MaxQuant input (PSMs)

  #39 opened 9 months ago by veitveit
  0

• Wrong session_state key check that may lead to possibly not initialized consensus spectrum

  #42 opened 10 months ago by michabirklbauer
  0

• TODO

  #1 opened a year ago by michabirklbauer
  1

• Implement figures, tab 2

  #4 opened a year ago by michabirklbauer
  1

• Check and impement deconvolution in FragAnnot

  #5 opened a year ago by michabirklbauer
  2

• Parsing of parameters for fraggraph instead of fragmentation dropdown

  #26 opened a year ago by michabirklbauer
  1

• Merge tabs 3 and 4 ?

  #32 opened a year ago by arthur-grimaud
  0

• Filter selection in Tab 2

  #29 opened a year ago by michabirklbauer
  0

• Parsing modification positions of peptidoform

  #19 opened a year ago by michabirklbauer
  4

• Max isotope and max charge filtering

  #21 opened a year ago by michabirklbauer
  1

• [Fraggraph] Missing functions in frag_graph_report.py

  #22 opened a year ago by michabirklbauer
  2

• [Fraggraph] ms-level information not available in MGF

  #18 opened a year ago by michabirklbauer
  3

• [Fraggraph] Comparison of peptidoforms with less/more than two modifications

  #27 opened a year ago by michabirklbauer
  0

• Find suitable example data

  #33 opened a year ago by veitveit
  0

• Merging of spectra in Tab 3 ?

  #23 opened a year ago by arthur-grimaud
  1

• [spectra] Visualise ion types

  #31 opened a year ago by carolinelennartsson
  0

• Common parameters in the sidebar

  #24 opened a year ago by michabirklbauer
  1

• mzML support?

  #17 opened a year ago by michabirklbauer
  2

• Create interface for spetrum selection (tab 3)

  #6 opened a year ago by michabirklbauer
  0

• Set main structure of app

  #2 opened a year ago by michabirklbauer
  0

• Full integration of FragAnnot

  #7 opened a year ago by michabirklbauer
  0