michabirklbauer

michabirklbauer's Stars

• jellyfin/jellyfin

  The Free Software Media System - Server Backend & API

  Language:C#38.3k3256.9k3.4k

• astral-sh/ruff

  An extremely fast Python linter and code formatter, written in Rust.

  Language:Rust37.3k886.4k1.3k

• zen-browser/desktop

  A calmer internet, without any gimmicks.

  Language:JavaScript27.8k724.9k736

• DioxusLabs/dioxus

  Fullstack app framework for web, desktop, mobile, and more.

  Language:Rust26.2k1331.7k1k

• KaTeX/KaTeX

  Fast math typesetting for the web.

  Language:JavaScript18.9k2831.6k1.2k

• slint-ui/slint

  Slint is a declarative GUI toolkit to build native user interfaces for Rust, C++, or JavaScript apps.

  Language:Rust18.7k1082.5k653

• microsoft/pyright

  Static Type Checker for Python

  Language:Python14.1k1306.7k1.6k

• google-deepmind/alphafold3

  AlphaFold 3 inference pipeline.

  Language:Python6.3k59326782

• quarto-dev/quarto-cli

  Open-source scientific and technical publishing system built on Pandoc.

  Language:JavaScript4.3k335.5k349

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.4k758.2k941

• scverse/scanpy

  Single-cell analysis in Python. Scales to >100M cells.

  Language:Python2k481.8k620

• dreamRs/esquisse

  RStudio add-in to make plots interactively with ggplot2

  Language:R1.8k50236234

• Norbyte/bg3se

  Baldur's Gate 3 Script Extender

  Language:C++1.2k10245073

• theislab/single-cell-best-practices

  https://www.sc-best-practices.org

  Language:Jupyter Notebook86617209206

• drieslab/Giotto

  Spatial omics analysis toolbox

  Language:R29014294103

• CSOgroup/cellcharter

  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.

  Language:Python1121394

• jessegmeyerlab/proteomics-tutorial

  Language:HTML5951630

• ProteomicsML/ProteomicsML

  Community-curated tutorials and datasets for ML in proteomics

  Language:Jupyter Notebook505117

• scverse/spatialdata-plot

  Static plotting for spatialdata

  Language:Python49820916

• UCLouvain-CBIO/scp

  Single cell proteomics data processing

  Language:R263622

• pFindStudio/pDeepXL

  pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning

  Language:Python9511

• Cajun-data/nanoSPLITS

  Github repository for nanoSPLITS manuscript data and R scripts

  Language:HTML8110

• compomics/ML-course-VIB-2024

  Language:Jupyter Notebook80015

• lgatto/pRolocGUI

  Interactive visualisation and exploration of spatial proteomics data

  Language:R831145

• hgb-bin-proteomics/MSAnnika

  MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.

  7280

• Noble-Lab/FDRBench

  Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment

  Language:Java7441

• Bogdanob/XLMS_decoyFusion

  The Performance of Context Sensitive Filtering Combined with Decoy Fusion on XL-MS data

  Language:R310

• hgb-bin-proteomics/MSAmanda

  MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.

  3210

• SimpleNumber/SCP_on_AstralMS

  Data analysis and figure plotting for «Challenging the Astral mass analyzer - up to 5300 proteins per single cell at unseen quantitative accuracy to study cellular heterogeneity» paper.

  Language:Jupyter Notebook3100

• liyuan-bioinfo/SCPro

  Language:R1100