michaelsilverstein/mineer

Issues

• Compare to DADA2 filterAndTrim() function

  #41 opened 3 years ago by michaelsilverstein
  0

• Different thresholds for each direction?

  #6 opened 3 years ago by michaelsilverstein
  0

• Parallel processing mineer def works

  #38 opened 3 years ago by michaelsilverstein
  1

• Loading large files takes a longish time

  #30 opened 3 years ago by michaelsilverstein
  8

• Gzip.open() to xopen()

  #37 opened 3 years ago by michaelsilverstein
  0

• Do seqs need to be same length?

  #21 opened 3 years ago by michaelsilverstein
  2

• Considerations for pair overlap

  #25 opened 3 years ago by michaelsilverstein
  0

• Create QIIME plugin

  #35 opened 3 years ago by michaelsilverstein
  0

• Filter out truncated reads that don't pass qc?

  #23 opened 3 years ago by michaelsilverstein
  0

• Create viz module

  #15 opened 3 years ago by michaelsilverstein
  0

• Test single end

  #19 opened 3 years ago by michaelsilverstein
  0

• Pass read pair to read

  #20 opened 3 years ago by michaelsilverstein
  1

• Report trimpos stats

  #12 opened 3 years ago by michaelsilverstein
  0

• New arg parser

  #3 opened 3 years ago by michaelsilverstein
  0

• Test length of pairs are same

  #7 opened 3 years ago by michaelsilverstein
  0

• Change subsample strategy

  #9 opened 3 years ago by michaelsilverstein
  0

• Speed

  #2 opened 3 years ago by michaelsilverstein
  1

• Add +1 to trimend in minEER()

  #10 opened 3 years ago by michaelsilverstein
  0

• Evaluate qc for all instances of manual trim

  #11 opened 3 years ago by michaelsilverstein
  0

• Split up mineer run and manual trim

  #13 opened 3 years ago by michaelsilverstein
  0

• File path property

  #4 opened 3 years ago by michaelsilverstein
  0

• Load gzip

  #5 opened 3 years ago by michaelsilverstein
  1