Pinned Repositories
2021_ecoli_pathogenicity
Bacterial GWAS for E. coli BSI genetic determinants
2022_sarscov2_epistasis
Estimating epistatic interactions from SARS-CoV-2 genomes
2023_ecoli_protection
BacGWASim
A Simulator for Bacterial Machine learning and Genome-Wide Association Studies
CodeClub_Rosalind
microGWAS
Bacterial GWAS analysis
panfeed
A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.
panfeed_benchmark_scripts
This repository contains the scripts that were used to test panfeed and visualize results of other programs.
plate_reader_evolution
Evolution experiments in microplate formats
SalisLabCode
Models, design algorithms, and other software related to Salis lab publications
Microbial Pangenomes Lab's Repositories
microbial-pangenomes-lab/microGWAS
Bacterial GWAS analysis
microbial-pangenomes-lab/panfeed
A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.
microbial-pangenomes-lab/2021_ecoli_pathogenicity
Bacterial GWAS for E. coli BSI genetic determinants
microbial-pangenomes-lab/2022_sarscov2_epistasis
Estimating epistatic interactions from SARS-CoV-2 genomes
microbial-pangenomes-lab/2023_ecoli_protection
microbial-pangenomes-lab/BacGWASim
A Simulator for Bacterial Machine learning and Genome-Wide Association Studies
microbial-pangenomes-lab/ChiBio
ChiBio primary operating system.
microbial-pangenomes-lab/CodeClub_Rosalind
microbial-pangenomes-lab/panfeed_benchmark_scripts
This repository contains the scripts that were used to test panfeed and visualize results of other programs.
microbial-pangenomes-lab/plate_reader_evolution
Evolution experiments in microplate formats
microbial-pangenomes-lab/SalisLabCode
Models, design algorithms, and other software related to Salis lab publications
microbial-pangenomes-lab/2022_python_course
Introduction to python for biologists (2022 edition)
microbial-pangenomes-lab/2024_aso_evolution
Analysis script for the laboratory evolution experiments with ASOs
microbial-pangenomes-lab/bacterial_transcription
microbial-pangenomes-lab/microbial-pangenomes-lab.github.io
microbial-pangenomes-lab/panaroo
An updated pipeline for pangenome investigation