microbiomedata/metaMAGs

Issues

• eukaryotic_evaluation has completeness and contamination as strings

  #61 opened a month ago by mbthornton-lbl
  0

• Implement GH action to build and push updates

  #63 opened a month ago by mbthornton-lbl
  0

• Graphic in documentation is vertically stretched (deviating from native proportions)

  #58 opened 2 months ago by eecavanna
  1

• Reduce file size of graphic in documentation (currently 2.5 MB)

  #56 opened 2 months ago by eecavanna
  0

• update num_tRNA to num_t_rna in mbin_stats.py

  #54 opened 3 months ago by aclum
  1

• Add eukcc results to _mags_stats.json

  #52 opened 4 months ago by aclum
  0

• total bases and gene counts issues

  #49 opened 4 months ago by aclum
  1

• updates to create tar python script and corresponding package WDL task

  #48 opened 4 months ago by aclum
  0

• Extract phylum data from MAG to support taxonomic search

  #6 opened 5 months ago by hubin-keio
  7

• create_tarfiles.py not generating correct output when using nmdc style identifiers

  #37 opened 5 months ago by aclum
  9

• Speed up packaging

  #46 opened 5 months ago by scanon
  0

• Add wdl linter github action

  #39 opened 5 months ago by aclum
  0

• Error in package tasks

  #26 opened 5 months ago by scanon
  4

• fix wdl validation error

  #41 opened 5 months ago by aclum
  0

• Sample without LQ mags failed on metaMAGs

  #34 opened 6 months ago by chienchi
  0

• Make release workflow

  #15 opened 6 months ago by Michal-Babins
  0

• eukCC failed on quoted node names.

  #32 opened 7 months ago by chienchi
  1

• add eukcc component to binning workflow

  #28 opened 8 months ago by aclum
  2

• Add support for passing a contig name mapping file to mbin.py

  #29 opened 9 months ago by aclum
  1

• remove JGI mbin files from Docker folder

  #25 opened 9 months ago by aclum
  3

• review MAG output files

  #22 opened 10 months ago by aclum
  4

• silent error during call-mbin_nmdc

  #19 opened 10 months ago by aclum
  5

• MAGs_stats files content are empty even there are binning result.

  #17 opened a year ago by chienchi
  0

• Prepare mags workflow for updated version of MAGS for NEON

  #12 opened a year ago by Michal-Babins
  2

• Package MAGs with annotations

  #9 opened 2 years ago by scanon
  2

• Review updates to MAGS workflow and update nmdc schema accordingly.

  #11 opened 2 years ago by Michal-Babins
  3

• Generate TSV report of the bins

  #7 opened 3 years ago by scanon
  1

• Issue with metaG MAGS on EDGE

  #8 opened 3 years ago by ssarrafan
  1

• Workflows - Test large data sets for workflows (metaMAGs)

  #1 opened 3 years ago by ssarrafan
  3

• Finish end-to-end workflows for MG

  #5 opened 4 years ago by ssarrafan
  2

• Workflows - Test small data sets for workflows (metaMAGs)

  #2 opened 4 years ago by ssarrafan
  3