Pinned Repositories
chos
Chroot OS
container_proxy
Container Proxy Service and Client
ecp-tutorial
Material for the ECP Tutorial on Containers
shifter
Shifter - Linux Containers for HPC
shifter_import
Utility scripts to import an image into Shifter.
taskfarmer
A Task Farmer designed to faciliate running serial applications in parallel, especially for bioinformatics
scanon's Repositories
scanon/container_proxy
Container Proxy Service and Client
scanon/shifter
Shifter - Linux Containers for HPC
scanon/common
Location for shared common files in github.com/containers repos.
scanon/CompMolNWChem
scanon/condor-worker
scanon/example_code
Example Code
scanon/execution_engine2
KBase Execution Engine
scanon/hpcsyspros19
scanon/image-tools
OCI Image Tooling
scanon/index_runner_deluxe
Creates indexes for elasticsearch from KBase data
scanon/JobRunner
KBase Job Runner
scanon/jupyterhub-deploy
Docker Deployment of NERSC Jupyterhub (including auth and spawner modules)
scanon/kb_functional_enrichment_1
scanon/metaG
End-to-end workflow for metaG processing (WIP)
scanon/mg_annotation
Metagenome Annotation Workflow
scanon/nmdc_kbase_metaassembly
NMDC MetaAssembly for KBase
scanon/notebook
Jupyter Interactive Notebook
scanon/relation_engine
Repository containing the KBase Relation Engine API, specs, and other related files.
scanon/relation_engine_importers
Relation engine importers
scanon/relation_engine_spec
Specifications and config for the KBase Relation Engine
scanon/runner_test
Runner Test
scanon/sample_service_validator_config
Stores the sample service metadata validation configuration file.
scanon/sc20-tutorial
HPC Container Tutorials at SC20
scanon/service_wizard
KBase Service Wizard to manage dynamic services
scanon/slurm-k8s-cluster
A Slurm cluster for Kubernetes
scanon/spin-recipes-1
Repository of Spin Recipes
scanon/storage
scanon/taxonomy_re_api
Taxonomy API using the Relation Engine
scanon/wdl
Workflow Description Language - Specification and Implementations
scanon/WorkflowPlanning
This is primarily a repo for capturing policies and discussions around the different workflows for NMDC. This is also used for project management related pieces.