execution_engine2

This is a KBase module generated by the KBase Software Development Kit (SDK).

You will need to have the SDK installed to use this module. Learn more about the SDK and how to use it.

You can also learn more about the apps implemented in this module from its catalog page or its spec file.

Setup and test

See the .travis file for information on how to test

modify test/example.env to add your token/endpoint for api tests
modify test/example.env to add test/deploy.cfg path
copy the test/example.env into test/test.env

Test Running Options

Run tests on local machine without docker (not recommended)

Attempt to install all dependencies

python3 -m venv venv && source venv && pip install -r requirements.txt
make test
make test-models

If you cannot install dependencies on your local machine, install your python interpreter into a docker container

test/dockerfiles/condor/

For light testing just htcondor bindings

Ensure requirements.txt is up to date

cd test/dockerfiles/condor/
docker build -f DockerfileForInterpreter . -t ee2_dev
docker run -ti -d --privileged=true -v /sys/fs/cgroup:/sys/fs/cgroup:ro -v /Users:/Users  ee2_dev

For full testing, including the ability for containers to be networked

Ensure requirements.txt is up to date
Ensure docker-compose.env is populated

cd /test/dockerfiles/condor
docker build -f Dockerfile . -t kbase/ee2:local_condor
#docker push kbase/ee2:local_condor
docker-compose up -d

Installation from another module

To use this code in another SDK module, call kb-sdk install execution_engine2 in the other module's root directory.

Help

Contact @Tianhao-Gu, @bio_boris, @briehl

scanon/execution_engine2