Assembly_vis failed when there is no contigs > 500bp
chienchi opened this issue · 0 comments
chienchi commented
sed: can't read /expanse/projects/nmdc/edge_app/nmdc-edge/io/projects/oDgDOwRIAsbb7Z3R/output/MetagenomeAssembly/report.html: No such file or directory
mv: cannot stat '/expanse/projects/nmdc/edge_app/nmdc-edge/io/projects/oDgDOwRIAsbb7Z3R/output/MetagenomeAssembly/report.txt': No such file or directory
should add set -ueo pipefail on the task and file check once there is no contig size > 500 and no report.html generated.