microbiomedata/nmdc-edge

Issues

• metaT failing at rfam

  #208 opened a month ago by mflynn-lanl
  1

• Delete obsolete `Dockerfile`s (i.e. the ones for Node v16 and Node v18)

  #301 opened a month ago by eecavanna
  0

• Switch reverse proxy from Caddy to Nginx

  #289 opened a month ago by eecavanna
  1

• Consider giving Caddy some persistent storage (Jetstream2)

  #223 opened 2 months ago by eecavanna
  1

• Allow users to submit files larger than 5 GB (Jetstream)

  #299 opened 2 months ago by eecavanna
  0

• create workflow error file

  #291 opened 2 months ago by mflynn-lanl
  1

• Logger logs `[object Object]` instead of error details

  #288 opened 2 months ago by eecavanna
  4

• Document process of creating an admin user and then logging in as that user

  #274 opened 2 months ago by eecavanna
  11

• File uploads time out after 5 minutes (Jetstream2)

  #232 opened 2 months ago by eecavanna
  6

• Show top100 features for metaT

  #294 opened 2 months ago by yxu-lanl
  1

• Resolve security issues reported by GitHub's dependabot (100+)

  #230 opened 2 months ago by eecavanna
  3

• sync with NMDC metaMAGs outputs

  #283 opened 2 months ago by chienchi
  0

• Metatranscriptome samples fail processing

  #268 opened 2 months ago by ssarrafan
  12

• Cloudflare: Request HTTP request size limit be increased

  #275 opened 2 months ago by eecavanna
  4

• Add "Data API" link to navigation menu (pointing to Runtime API)

  #284 opened 2 months ago by eecavanna
  1

• MongoDB spontaneously drops the `nmdcedge` database (Jetstream2)

  #215 opened 2 months ago by mflynn-lanl
  12

• metaMAGs eukccdb variable error

  #281 opened 2 months ago by chienchi
  0

• Node.js script tries to run `mongodump` (nonexistent in `app` container)

  #220 opened 4 months ago by eecavanna
  5

• Remove duplicate inputs

  #279 opened 2 months ago by yxu-lanl
  1

• Missing eukcc result in metaMAGs.

  #277 opened 2 months ago by chienchi
  0

• Convert WDL files to v1.0

  #262 opened 3 months ago by mflynn-lanl
  4

• Configure Mongo to require authentication and update web app accordingly

  #239 opened 3 months ago by eecavanna
  0

• Store Mongo configuration file in Git repository (Jetstream2)

  #233 opened 4 months ago by eecavanna
  8

• Add result sections for all parts of MetaT outputs

  #245 opened 3 months ago by yxu-lanl
  0

• Long Reads QC and Assembly

  #265 opened 3 months ago by kaijli
  0

• Error in package tasks of metaMAGs

  #256 opened 3 months ago by chienchi
  0

• Display NOM, MetaT and geNomad results with pagination data table

  #244 opened 3 months ago by yxu-lanl
  0

• Fix Retrieve SRA Data error

  #255 opened 3 months ago by yxu-lanl
  0

• Reload iframe src with new url not working in Safari

  #259 opened 3 months ago by yxu-lanl
  0

• Document process of setting up web app VM (Jetstream2)

  #229 opened 4 months ago by eecavanna
  2

• Recreate web app VM and automate/document the process (Jetstream2)

  #240 opened 4 months ago by eecavanna
  1

• Assembly_vis failed when there is no contigs > 500bp

  #253 opened 4 months ago by chienchi
  0

• MAGs template error

  #243 opened 4 months ago by mflynn-lanl
  1

• fix readsqc input error

  #248 opened 4 months ago by mflynn-lanl
  0

• Update `docker-compose.prod.yml` file to propagate workflow-related environment variables (Jetstream2)

  #246 opened 4 months ago by eecavanna
  0

• Update ReadsQC result UI

  #237 opened 4 months ago by yxu-lanl
  1

• ReadsBasedAnalysis only take first fastq input in metaG workflow

  #231 opened 4 months ago by chienchi
  0

• Cannot upload files larger than 500 Mebibytes via web UI (Jetstream2)

  #218 opened 4 months ago by mflynn-lanl
  16

• The `client_id` in the ORCID Redirect URL is empty (Jetstream2)

  #227 opened 4 months ago by eecavanna
  1

• ORCID login no longer works (Jetstream2)

  #222 opened 4 months ago by eecavanna
  3

• Create variable named `ORCID_CLIENT_ID` in `nmdc-edge` GitHub repo

  #225 opened 4 months ago by eecavanna
  1

• Display file upload progress indicator (progress bar, percentage, or number of bytes)

  #226 opened 4 months ago by eecavanna
  0

• Mongo container logs repeatedly show "Received interrupt request for unknown op" message

  #221 opened 4 months ago by eecavanna
  0

• add firewall to Magic Castle cluster

  #219 opened 4 months ago by mflynn-lanl
  1

• MAGs fails with larger sample file

  #217 opened 4 months ago by mflynn-lanl
  0

• Automate Magic Castle deployment

  #216 opened 4 months ago by mflynn-lanl
  0

• fix ReadbasedAnalysis container in metaG template

  #213 opened 4 months ago by mflynn-lanl
  0

• Sample without LQ mags failed on metaMAGs

  #211 opened 4 months ago by chienchi
  0

• Allow developer to customize UID/GID of user within production `app` container

  #203 opened 4 months ago by eecavanna
  0

• Handle 'Unauthorized' alert

  #201 opened 4 months ago by yxu-lanl
  1