cromwell
There are 44 repositories under cromwell topic.
openwdl/wdl
Workflow Description Language - Specification and Implementations
XboxDev/cromwell
A free, legal BIOS replacement for the original Xbox
LUMC/pytest-workflow
Configure workflow/pipeline tests using yaml files.
broadinstitute/cromshell
CLI for interacting with Cromwell servers
broadinstitute/wdl-ide
Rich IDE support for Workflow Description Language
stjudecloud/oliver
An opinionated Cromwell orchestration manager.
seandavi/wdlRunR
Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
stjudecloud/workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
stjudecloud/wdldoc
Create WDL documentation using Markdown.
antonkulaga/cromwell-client
Client for the Cromwell workflow engine
EI-CoreBioinformatics/reat
Robust Eukaryotic Annotation Toolkit
lmtani/pumbaa
Command-line interface for Cromwell server
broadinstitute/widdler
A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.
yjcyxky/choppy-pipe
An integrated analysis platform for efficiently achieving computational reproducibility
FredHutch/diy-cromwell-server
A repo containing instructions for running a Cromwell server on Gizmo at the Fred Hutch. (Contact Amy Paguirigan for questions)
TNTurnerLab/ACES
ACES is a workflow to query small sequences in a large set of genomes. It provides several outputs including BLAST results, a multiple sequence alignment file, a graphical fragment assembly file, and a phylogenetic tree file.
microbiomedata/nmdc-edge
Web-based interface to the NMDC EDGE platform
CNRGH/WMS-benchmark
Workflow management system benchmark
yunhailuo/cromwell-authNboard
Dashboard for better visual at workflows on Cromwell server
benben-miao/OmicsFlowBuilder
Omics Flow Builders, such as Cromwell (Java), Nextflow (Java), Snakemake (Python).
berguner/atacseq_pipeline
BSF ATAC-seq pipeline
rnacentre/WDL_Tools
WDL workflow language program, developed for singlecell rna sequencing data analysis, maintained by @OOAAHH(SunHao) .
HaoKuo/NGS-pipeline
GATK and VARSCAN analysis pipeline
OOAAHH/SRA_Analysis_WDL
用于bioos的大规模数据分析
wleepang/cromwell-hackathon
utilities for cromwell hackathon
wtsi-hgi/olly-maersk
Containerisation-agnostic LSF execution configuration for Cromwell
FaithGriffin/CandidaPhylo
Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.
NGeneBio-Genomics-Platform/workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
nolwarre/WDL-CI-actions
Example Repository for setting up GitHub Actions for WDL and CWL workflows for CI/CD
wsi-hgi-tre/pipelines
Workflow pipelines for the Solita TRE
hisplan/cromwell-gwf-setup
Setting up Cromwell + AWS GWF (Genomics Workflows)
jlboat/Cromwell_PBSPro
An example implementation for the Cromwell workflow management system on PBS Pro
oicr-gsi/varscan
varscan repo contains code for Varscan workflow
sgsfak/cwl-progress-cgi
A CGI for getting the status of a workflow execution in Cromwell
XboxDev/Gentoox-Loader
Reconstructed archive of Gentoox-Loader (Cromwell fork)
YogiOnBioinformatics/AALS-Epigenomics-Signal-Reproducibility
Determining reproducibility of Epigenomic signal for Answer ALS