EI-CoreBioinformatics/reat

Issues

• SNAP gene predictor training fails.

  #46 opened a year ago by MmasterT
  0

• Transcriptome workflow, mikado crashes at serialise step

  #45 opened a year ago by elisagold
  1

• install failed

  #42 opened 2 years ago by yuzhenpeng
  11

• Add specific prefix to mikado runs within REAT

  #41 opened 2 years ago by swarbred
  0

• How to cite REAT in a paper

  #40 opened 2 years ago by dadrasarmin
  2

• Change the hardcoded chunk values in EVM

  #37 opened 2 years ago by gemygk
  0

• cromwell issue - exceeds configured limit of 1000000

  #38 opened 2 years ago by swarbred
  3

• generate_augustus_test_and_train default --target_mono_exonic_pct

  #34 opened 3 years ago by swarbred
  2

• Suggestions for improving prediction workflow documentation on https://reat.readthedocs.io/

  #35 opened 3 years ago by dadrasarmin
  12

• switch to csi index

  #32 opened 2 years ago by swarbred
  0

• Reat prediction protein alignment improvements

  #33 opened 3 years ago by swarbred
  0

• Error + Fix minimap issue mapping to large genomes

  #30 opened 3 years ago by swarbred
  0

• BUG typo affecting exonhints.augustus

  #25 opened 3 years ago by swarbred
  0

• call-LengthChecker - presence of extra base (stop codon) affects classifcation

  #21 opened 3 years ago by swarbred
  8

• expose resources for call-OptimiseAugustus

  #28 opened 3 years ago by swarbred
  5

• Reat Homology - Runtime, hardware requirement estimation, verbose, log

  #29 opened 3 years ago by dadrasarmin
  4

• Need more instructions to setup REAT in Conda

  #24 opened 3 years ago by sanyalab
  11

• gff_to_aug_hints error with empty file

  #22 opened 3 years ago by swarbred
  0

• Error providing external augustus config

  #23 opened 3 years ago by swarbred
  0

• bug call-SubdivideSequence (minor bug, major effect)

  #20 opened 3 years ago by swarbred
  1

• Bug soft / hard masking

  #19 opened 3 years ago by swarbred
  0

• RM hints set strand to "."

  #18 opened 3 years ago by swarbred
  0

• Repeat priority not read from input agustus priority file

  #17 opened 3 years ago by swarbred
  0

• generate summary stats file for reat homology

  #15 opened 3 years ago by swarbred
  0

• call-FailMerge merging pass files rather than fail files

  #5 opened 4 years ago by swarbred
  0