bug call-SubdivideSequence (minor bug, major effect)
swarbred opened this issue · 1 comments
There is a bug with the chunking for augustus (call-SubdivideSequence)
should be start = end + 1 - ~{overlap}
i.e. remove the +
Before the fix
This sequence generates the following chunks:
Calendula_officinalis_EIV1.2_Contig_0000001:1-3000001
Calendula_officinalis_EIV1.2_Contig_0000001:2900003-5900003
Calendula_officinalis_EIV1.2_Contig_0000001:8700007-11700007
Calendula_officinalis_EIV1.2_Contig_0000001:20300015-23300015
Calendula_officinalis_EIV1.2_Contig_0000001:43500031-46500031
Calendula_officinalis_EIV1.2_Contig_0000001:89900063-92900063
Calendula_officinalis_EIV1.2_Contig_0000001:182700127-104728146
With the fix
Calendula_officinalis_EIV1.2_Contig_0000001:1-3000001
Calendula_officinalis_EIV1.2_Contig_0000001:2900002-5900002
Calendula_officinalis_EIV1.2_Contig_0000001:5800003-8800003
Calendula_officinalis_EIV1.2_Contig_0000001:8700004-11700004
Calendula_officinalis_EIV1.2_Contig_0000001:11600005-14600005
Calendula_officinalis_EIV1.2_Contig_0000001:14500006-17500006
Calendula_officinalis_EIV1.2_Contig_0000001:17400007-20400007
Calendula_officinalis_EIV1.2_Contig_0000001:20300008-23300008
Calendula_officinalis_EIV1.2_Contig_0000001:23200009-26200009
Calendula_officinalis_EIV1.2_Contig_0000001:26100010-29100010
Calendula_officinalis_EIV1.2_Contig_0000001:29000011-32000011
Calendula_officinalis_EIV1.2_Contig_0000001:31900012-34900012
Calendula_officinalis_EIV1.2_Contig_0000001:34800013-37800013
Calendula_officinalis_EIV1.2_Contig_0000001:37700014-40700014
Calendula_officinalis_EIV1.2_Contig_0000001:40600015-43600015
Calendula_officinalis_EIV1.2_Contig_0000001:43500016-46500016
Calendula_officinalis_EIV1.2_Contig_0000001:46400017-49400017
Calendula_officinalis_EIV1.2_Contig_0000001:49300018-52300018
Calendula_officinalis_EIV1.2_Contig_0000001:52200019-55200019
Calendula_officinalis_EIV1.2_Contig_0000001:55100020-58100020
Calendula_officinalis_EIV1.2_Contig_0000001:58000021-61000021
Calendula_officinalis_EIV1.2_Contig_0000001:60900022-63900022
Calendula_officinalis_EIV1.2_Contig_0000001:63800023-66800023
Calendula_officinalis_EIV1.2_Contig_0000001:66700024-69700024
Calendula_officinalis_EIV1.2_Contig_0000001:69600025-72600025
Calendula_officinalis_EIV1.2_Contig_0000001:72500026-75500026
Calendula_officinalis_EIV1.2_Contig_0000001:75400027-78400027
Calendula_officinalis_EIV1.2_Contig_0000001:78300028-81300028
Calendula_officinalis_EIV1.2_Contig_0000001:81200029-84200029
Calendula_officinalis_EIV1.2_Contig_0000001:84100030-87100030
Calendula_officinalis_EIV1.2_Contig_0000001:87000031-90000031
Calendula_officinalis_EIV1.2_Contig_0000001:89900032-92900032
Calendula_officinalis_EIV1.2_Contig_0000001:92800033-95800033
Calendula_officinalis_EIV1.2_Contig_0000001:95700034-98700034
Calendula_officinalis_EIV1.2_Contig_0000001:98600035-101600035
Calendula_officinalis_EIV1.2_Contig_0000001:101500036-104500036
Calendula_officinalis_EIV1.2_Contig_0000001:104400037-104728146