openwdl/wdl

Issues

• Proposal: allow member access operator to accept a `Struct?`, `Object?`, or `Pair?` on the LHS

  #684 opened 2 months ago by peterhuene
  1

• Clarification: is `File` to `String` type coercion supported?

  #685 opened 2 months ago by peterhuene
  1

• `basename` and `size` should have explicit `String` overloads

  #683 opened 3 months ago by peterhuene
  0

• Spec: clarification needed for remainder operator on float operands

  #682 opened 3 months ago by peterhuene
  0

• Require execution engines to support http(s) URLs in `File` declaration expressions

  #679 opened 4 months ago by jdidion
  1

• Is `glob()` a real normal function or a special magic thing in WDL 1.0?

  #680 opened 3 months ago by adamnovak
  8

• Semantics for `runtime` `disks` mount points are confusing

  #672 opened 5 months ago by adamnovak
  2

• Should `read_json()` work when file contents uses single quotes?

  #671 opened 5 months ago by stxue1
  0

• Should files imported from JSON be relative to the working directory or relative to the JSON file

  #678 opened 4 months ago by stxue1
  4

• Disallow relative path literals in declaration expressions except in output section

  #676 opened 4 months ago by stxue1
  1

• Undefined behavior when turning coerced optional `File?` to null + Clarification about where String to File coercion takes place

  #673 opened 5 months ago by stxue1
  4

• Add `volumes` requirement

  #675 opened 4 months ago by jdidion
  0

• Undefined behavior for string to file coercion when file does not exist

  #667 opened 5 months ago by stxue1
  2

• The provided correct example for stripping leading whitespace is a Python heredoc that does not run

  #668 opened 5 months ago by adamnovak
  0

• Mismatched variable names in test_prefix.wdl unit test

  #666 opened 5 months ago by stxue1
  1

• Call statements have a syntax error in if_else.wdl unit test

  #665 opened 5 months ago by stxue1
  1

• Missing input in allow_nested.wdl unit test

  #664 opened 5 months ago by stxue1
  1

• Missing output variable in python_strip_task.wdl unit test

  #663 opened 5 months ago by stxue1
  0

• No output section in map_to_struct.wdl unit test

  #662 opened 5 months ago by stxue1
  0

• Expected output in test_struct.wdl unit test does not exist

  #661 opened 5 months ago by stxue1
  0

• WDL comment test does not run due to passing in a nonpath string into cat

  #654 opened 5 months ago by stxue1
  0

• Example WDL test for gpu's does not work depending on default executor container

  #653 opened 5 months ago by stxue1
  0

• Introduce enum syntax

  #658 opened 5 months ago by patmagee
  3

• Support Input Validation for Workflow and Tasks

  #657 opened 5 months ago by patmagee
  0

• Add List Comprehension to the SPEC

  #651 opened 6 months ago by patmagee
  10

• Are workflow declarations optional?

  #655 opened 6 months ago by stxue1
  2

• Wrong paths for WDL 1.1 example tests

  #652 opened 6 months ago by stxue1
  1

• Fix section titles with emojis

  #616 opened 6 months ago by jdidion
  0

• Add toil to list of engines

  #649 opened 6 months ago by patmagee
  0

• Clarify access to a non-existent `Object` member

  #596 opened 6 months ago by jdidion
  3

• Clarify which task elements and workflows are singular and which can be specified multiple times.

  #594 opened 6 months ago by claymcleod
  2

• I don't want to use the docker to run the task

  #638 opened 6 months ago by honghh2018
  3

• Add sprocket to language support docs

  #639 opened 6 months ago by vsmalladi
  2

• documenting outputs in **parameter**_meta isn't clear

  #637 opened 7 months ago by a-frantz
  0

• Tracking: WDL packing and discovery

  #613 opened 9 months ago by jdidion
  0

• Tracking: Simplifying large inputs

  #612 opened 9 months ago by jdidion
  0

• Tracking: Error handling

  #611 opened 9 months ago by jdidion
  0

• Tracking: inline Docker files

  #610 opened 9 months ago by jdidion
  0

• Tracking: `Tuple` type

  #609 opened 9 months ago by jdidion
  0

• Tracking: type simplification

  #608 opened 9 months ago by jdidion
  0

• Tracking: changes to imports

  #607 opened 9 months ago by jdidion
  0

• Add BNF grammar

  #586 opened a year ago by jdidion
  1

• function to grab file extension

  #590 opened 9 months ago by besh-t
  2

• Coordinate announcement of WDL 1.1.1 and change to repository structure

  #589 opened 9 months ago by jdidion
  0

• Getting workflow inputs

  #599 opened 9 months ago by mbestipa
  1

• Threading control

  #601 opened 10 months ago by choishingwan
  0

• Clarify whether private declarations are permissible within workflows.

  #597 opened a year ago by claymcleod
  0

• Failed to process task definition 'run1' (reason 1 of 1): Duplicate generated values found in: Node1, Outdir, Rawfile, Slurm, l, r, s

  #583 opened a year ago by triple-y
  1

• How to use local file as input?

  #584 opened a year ago by FionaMoon
  3

• How to set environment in wdl on server cluster?

  #582 opened a year ago by FionaMoon
  2