wdl
There are 136 repositories under wdl topic.
broadinstitute/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
DataBiosphere/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
openwdl/wdl
Workflow Description Language - Specification and Implementations
cfillion/reapack
📦 Package manager for REAPER
chanzuckerberg/miniwdl
Workflow Description Language developer tools & local runner
broadinstitute/long-read-pipelines
Long read production pipelines
dnanexus/UKB_RAP
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
dockstore/dockstore
An app store for scientific workflows, tools, notebooks, and services
biowdl/tasks
A collection of reusable WDL tasks. Category:Other
ga4gh/workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.
4dn-dcic/tibanna
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
LUMC/pytest-workflow
Configure workflow/pipeline tests using yaml files.
broadinstitute/cromshell
CLI for interacting with Cromwell servers
broadinstitute/wdl-ide
Rich IDE support for Workflow Description Language
PMCC-BioinformaticsCore/janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dnanexus/dxWDL
Workflow Description Language compiler for the DNAnexus platform
stjudecloud/oliver
An opinionated Cromwell orchestration manager.
stjude-rust-labs/sprocket
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
stjudecloud/workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
dnanexus/dxCompiler
WDL and CWL compiler for the DNAnexus platform
biowdl/RNA-seq
A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
ga4gh/tool-registry-service-schemas
APIs for discovering genomics tools, their metadata and their containers
otiai10/hotsub
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
common-workflow-lab/wdl2cwl
[Experimental] Workflow Definition Language (WDL) to CWL
stjude-rust-labs/wdl
Rust crates for working with Workflow Description Language (WDL) documents.
stjudecloud/wdldoc
Create WDL documentation using Markdown.
common-workflow-lab/wdl-cwl-translator
A translator from WDL to CWL v1.2
biowdl/germline-DNA
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
lmtani/pumbaa
Command-line interface for Cromwell server
dockstore/dockstore-ui2
Website user interface for Dockstore in Angular2
aCLImatise/CliHelpParser
Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
broadinstitute/widdler
A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.
biowdl/wdl-aid
Automatic Input Documentation for WDL workflows
danishsshaikh/KCCafeteria
Project for 5th Semester Subject -> WDL & DBMS
TaleTN/IPlugExample
IPlug "Tale" Edition example (tremolo effect).
Cristianetaniguti/Reads2Map
A collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.