chanzuckerberg/miniwdl

Issues

• Miniwdl does not work on ARM macs (e.g. M1)

  #652 opened a year ago by corneliusroemer
  7

• Unable to ignore `ImportNewerWDL` errors

  #716 opened 2 months ago by TimD1
  0

• Tasks with no output can't be cached

  #715 opened 2 months ago by adamnovak
  0

• Get error message when using Directory as workflow input: "Input Directory contains unusable symlink"

  #714 opened 2 months ago by zzzseeu
  0

• Unable to complete `run_self_test` on Mac (Intel)

  #713 opened 2 months ago by rickymagner
  0

• MiniWDL does not support map to struct coercion

  #712 opened 3 months ago by stxue1
  0

• docker login to private repositories

  #707 opened 4 months ago by giuliovn
  4

• MiniWDL does not properly support the POSIX regex standard

  #709 opened 3 months ago by stxue1
  0

• Trailing commas in metadata (`meta`/`parameter_meta`) arrays not allowed

  #708 opened 3 months ago by adthrasher
  0

• modernize pyproject tooling

  #668 opened 4 months ago by mlin
  0

• Docker containers with non-root users will fail silently with exit code 2 if MiniWDL's run directory belongs to a secondary group and has the group sticky bit set

  #706 opened 4 months ago by adamnovak
  0

• Scheduler's task_concurrency is not working (because it isn't in CPUs?)

  #705 opened 4 months ago by adamnovak
  2

• Plan for WDL 1.2 support?

  #703 opened 4 months ago by yunhailuo
  2

• Standard library function `as_map` outputs EvalError if File type is encountered

  #700 opened 4 months ago by stxue1
  1

• Standard library function `round()` does not round half numbers up.

  #698 opened 4 months ago by stxue1
  0

• Transposed array is not equal to its explicit equivalent

  #699 opened 4 months ago by stxue1
  0

• Standard library function `read_bool` does not support whitespace or capitalization

  #701 opened 4 months ago by stxue1
  0

• Standard library function `write_json` does prohibited serialization of integer keys

  #702 opened 4 months ago by stxue1
  0

• Docker service level logs ought to be logged at higher than debug level when something goes wrong

  #677 opened 9 months ago by adamnovak
  0

• Inconsistent behavior with optional file types when coercing from string

  #696 opened 4 months ago by stxue1
  2

• Support for WDL's Object type

  #694 opened 5 months ago by stxue1
  1

• Float values are not accepted for `cpu` because they don't coerce to int

  #690 opened 5 months ago by adamnovak
  0

• Cannot supply inputs to task only workflows

  #693 opened 5 months ago by stxue1
  1

• [Question] Should string-to-file coerced files ensure files exist at coercion or at use/output

  #695 opened 5 months ago by stxue1
  1

• support windows

  #692 opened 5 months ago by giuliovn
  0

• Run_self_test fails to download files

  #689 opened 5 months ago by erikwolfsohn
  2

• `struct` with optional fields

  #686 opened 6 months ago by adthrasher
  2

• Unusual behavior of `Directory` types that are cast to `String` and then entered into an `Array[String]`

  #681 opened 6 months ago by markjschreiber
  2

• `miniwdl check` (v1.11.0) fails with certain input orders of array types in calls to `transpose`

  #669 opened 6 months ago by jonn-smith
  0

• MyPy thinks `WDL._util.strip_leading_whitespace` is a `str` and not a function.

  #665 opened 6 months ago by adamnovak
  0

• No such function: write_objects

  #684 opened 7 months ago by TedBrookings
  0

• Get an interactive shell in a container

  #685 opened 6 months ago by adamnovak
  0

• [Question]: is runtime container as an array supportted?

  #683 opened 7 months ago by yunhailuo
  2

• Copy of input directory into Miniwdl "work" ?

  #680 opened 9 months ago by tetedange13
  0

• MiniWDL dedents the command section *after* substituting placeholders, which causes problems if substituted values contain newlines

  #674 opened 9 months ago by adamnovak
  2

• recognize interpolation nested in true= false=

  #671 opened 10 months ago by mlin
  1

• Cleaning up abandoned MiniWDL services

  #678 opened 9 months ago by adamnovak
  0

• Expose statistics about additional resource usage from containers

  #672 opened 9 months ago by adamnovak
  4

• MiniWDL can't parse a brace-enclosed command section with a brace in it

  #673 opened 9 months ago by adamnovak
  1

• `--containall` in Singularity will result in operation not permitted inside a Kubernetes pod

  #670 opened 10 months ago by stxue1
  0

• `miniwdl check` plugins

  #667 opened a year ago by mlin
  0

• Array coerces to String in MiniWDL

  #664 opened a year ago by stxue1
  0

• miniwdl check does not enforce parameter_meta requirements per spec

  #663 opened a year ago by aofarrel
  0

• v1.1 spec regex parsing

  #661 opened a year ago by adthrasher
  2

• How to ensure miniwdl waits for docker container to be in "healthy" state before executing task?

  #659 opened a year ago by maxalbert
  0

• Error running run_self_test in Ubuntu

  #657 opened a year ago by duartetorreserick
  1

• Add extension point for `String` to `File` coercion

  #656 opened a year ago by adamnovak
  0

• [singularity] provide opt-out for tmp mount

  #655 opened a year ago by mlin
  0

• Singularity incorrect output path resolution

  #648 opened a year ago by adthrasher
  2

• collect_by_key change object type

  #647 opened a year ago by choishingwan
  3