Pinned Repositories
aws-transcription-parser
An automatic parser of Amazon Transcribe jobs which outputs to HTML and DOCX.
bioinformatics-tool-template
Bioinformatics-tools
This repository holds code that has been developed by me as a member of the Notre Dame Bioinformatics Laboratory under the direction of Dr. Scott Emrich.
cloud-app-tutorial
Application tutorials for St. Jude Cloud.
connect-the-dots-in-a-github-repository
miniwdl-lsf
LSF backend for miniwdl
zoom_transcript_parser
CICERO
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
XenoCP
A cloud-based tool for mouse read cleansing in xenograft samples
workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
adthrasher's Repositories
adthrasher/miniwdl-lsf
LSF backend for miniwdl
adthrasher/zoom_transcript_parser
adthrasher/aws-transcription-parser
An automatic parser of Amazon Transcribe jobs which outputs to HTML and DOCX.
adthrasher/bioinformatics-tool-template
adthrasher/cloud-app-tutorial
Application tutorials for St. Jude Cloud.
adthrasher/connect-the-dots-in-a-github-repository
adthrasher/docs
Technical documentation for the St. Jude Cloud.
adthrasher/github-actions-continuous-delivery
adthrasher/github-actions-for-ci
adthrasher/github-actions-for-packages
adthrasher/hello-github-actions
adthrasher/innersource
adthrasher/merge-counts
Utility for merging RNA-seq expression counts files from St. Jude Cloud.
adthrasher/meteor-autoform
AutoForm is a Meteor package that adds UI components and helpers to easily create basic forms with automatic insert and update events, and automatic reactive validation.
adthrasher/portfolio
A simple SPA Portfolio template for developer/designers built with React. Use it to showcase your work, testimonials and other information to clients.
adthrasher/Programmable-Xmas-Tree
Sample code for ModMyPi's Programmable Xmas Tree
adthrasher/RNAIndel
Somatic indel discovery tool for tumor RNA-Seq data.
adthrasher/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
adthrasher/samtools_filter_exact
DNAnexus applet to filter inexact and exact matches into two separate BAMs for further analysis
adthrasher/samtools_flagstat
DNAnexus applet to create a flagstat for a BAM using samtools
adthrasher/seaseq
Abraham's lab - ChipSeq Pipeline
adthrasher/security-strategy-essentials
adthrasher/stjudecab.github.io
Official website for St. Jude CAB
adthrasher/template-test
adthrasher/test_template
adthrasher/The-Documentation-Compendium
📢 Various README templates & tips on writing high-quality documentation that people want to read.
adthrasher/wdl
Rust crates for working with Workflow Description Language (WDL) documents.
adthrasher/wdl-1
Workflow Description Language - Specification and Implementations
adthrasher/wdl_hello_world
Test repository for WDL
adthrasher/workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.