St. Jude Cloud
A blue sky project created to effectively share data produced at St. Jude Children's Research Hospital with the world.
Memphis, TN
Pinned Repositories
bioinformatics-tool-template
docs
Documentation on St. Jude Cloud.
expression-classification
merge-counts
Utility for merging RNA-seq expression counts files from St. Jude Cloud.
mtsg
Find and quantify COSMIC mutational signatures across samples
ngsderive
Forensic analysis tool useful in backwards computing information from next-generation sequencing data.
oliver
An opinionated Cromwell orchestration manager.
university
Educational materials for the St. Jude Cloud project.
wdldoc
Create WDL documentation using Markdown.
workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
St. Jude Cloud's Repositories
stjudecloud/oliver
An opinionated Cromwell orchestration manager.
stjudecloud/workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
stjudecloud/wdldoc
Create WDL documentation using Markdown.
stjudecloud/ngsderive
Forensic analysis tool useful in backwards computing information from next-generation sequencing data.
stjudecloud/docs
Documentation on St. Jude Cloud.
stjudecloud/university
Educational materials for the St. Jude Cloud project.
stjudecloud/bioinformatics-tool-template
stjudecloud/expression-classification
stjudecloud/mtsg
Find and quantify COSMIC mutational signatures across samples
stjudecloud/cloud-app-tutorial
Cloud application examples for St. Jude Cloud.
stjudecloud/merge-counts
Utility for merging RNA-seq expression counts files from St. Jude Cloud.
stjudecloud/theme
Component library and CSS themes for applications on the St. Jude Cloud project.
stjudecloud/cde-transformers
TODO
stjudecloud/cgc-go
stjudecloud/dx-build_visualizer
stjudecloud/dx-coverage_bw
stjudecloud/dx-fuzzion
DNAnexus implementation of Fuzzion (https://github.com/stjude/fuzzion)
stjudecloud/dx-manta
stjudecloud/dx-rapid_rnaseq
stjudecloud/dx-rnapeg
stjudecloud/dx-rnaseq_standard
Monolithic DNAnexus implementation of RNA-Seq V2 pipeline with miniwdl
stjudecloud/dx-STAR
DNAnexus app wrapper for STAR alignment
stjudecloud/dx-tag_outputs
stjudecloud/mkdocs-stjudecloud
A Material Design theme for MkDocs
stjudecloud/msgenctl
CLI to manage Microsoft Genomics workflows
stjudecloud/release-python-action
Github Action to release a Poetry-based Python app as we regularly do on the St. Jude Cloud project.
stjudecloud/rfcs
Request for Comments (RFCs) on the St. Jude Cloud Project.
stjudecloud/stjude_htseq_count
stjudecloud/utilities
Utility scripts created for and used on the St. Jude Cloud team.