vsmalladi
Sr. Scientist Bioinformatics @microsoft. Previously @utsw-bicf, @ENCODE-DCC, @ucscGenomeBrowser, @Kraus-Lab
Dallas, Texas
Pinned Repositories
alexa-hackathon
alexa-skills-kit-python
azure-benchmark-scripts
Scripts used in benchmarking Sentieon DNAseq and DNAscope pipelines on Azure
kaggle-learn-python
mrboddy
Repository for clueless
pytrackhub
Python module that will allow users to generate trackhub's for UCSC Genome Browser
somatic_dna_wdl
trackhubtest
Regression Test's for UCSC Genome Browser Track Hubs
vsmalladi's Repositories
vsmalladi/azure-benchmark-scripts
Scripts used in benchmarking Sentieon DNAseq and DNAscope pipelines on Azure
vsmalladi/somatic_dna_wdl
vsmalladi/awesome-reproducible-research
A curated list of reproducible research case studies, projects, tutorials, and media
vsmalladi/azure-storage-azcopy
The new Azure Storage data transfer utility - AzCopy v10
vsmalladi/configs
Config files used to define parameters specific to compute environments at different Institutions
vsmalladi/CromwellOnAzure
Microsoft Genomics supported implementation of the Broad Institute's Cromwell workflow engine on Azure
vsmalladi/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
vsmalladi/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
vsmalladi/nextflow
A DSL for data-driven computational pipelines
vsmalladi/nf-canary
A minimal Nextflow workflow for testing infrastructure.
vsmalladi/nf-dragen
POC Nextflow pipeline to run Illumina DRAGEN software
vsmalladi/nf-HAVoC
vsmalladi/openapi-action
Uses 'openapi-core' to generate lint errors/warnings and show as checks in GitHub Actions
vsmalladi/openapi-test-runner
An application allowing the TES servers to test their conformance to TES Specifications
vsmalladi/openwdl.github
Public OpenWDL webpage
vsmalladi/openwdl.github.io
vsmalladi/pb-human-wgs-workflow-wdl
vsmalladi/public_health_viral_genomics
Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2
vsmalladi/py-tes
Python SDK for the GA4GH Task Execution API
vsmalladi/rnamods-nf
vsmalladi/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
vsmalladi/task-execution-schemas
vsmalladi/terraform
Terraform configuration files for the Sentieon software
vsmalladi/test-cromwell-workflow
vsmalladi/tools
Python package with helper tools for the nf-core community.
vsmalladi/viral-pipelines
viral-ngs: complete pipelines
vsmalladi/warp
WDL Analysis Research Pipelines
vsmalladi/wdl
Workflow Description Language - Specification and Implementations
vsmalladi/wdl-HAVoC
vsmalladi/workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.