/rnamods-nf

Primary LanguageNextflow

rnamods-nf

This repository contains nextflow pipeline that I created to process the data from direct RNA sequencing using nanopore sequencer - MinION - specifically identifying RNA modifications.

Requirements to run the pipeline

  1. Fastq files for 3 biological replicates for both native and in vitro RNA of a bacterial strain
  2. Folders containing references for the bacteria
  3. Folders containing fast5 files for each replicate