reproducible-science
There are 249 repositories under reproducible-science topic.
IDSIA/sacred
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
nextflow-io/nextflow
A DSL for data-driven computational pipelines
apptainer/singularity
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
openwdl/wdl
Workflow Description Language - Specification and Implementations
benmarwick/rrtools
rrtools: Tools for Writing Reproducible Research in R
showyourwork/showyourwork
A workflow for reproducible and open scientific articles
mit-ll-responsible-ai/hydra-zen
Create powerful Hydra applications without the yaml files and boilerplate code.
leipzig/awesome-reproducible-research
A curated list of reproducible research case studies, projects, tutorials, and media
VIDA-NYU/reprozip
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
o2r-project/containerit
Package an R workspace and all dependencies as a Docker container
genecell/single-cell-papers-with-code
Papers with code for single cell related papers
Kaixhin/FGLab
Future Gadget Laboratory
InsightSoftwareConsortium/ITK-Wasm
High performance spatial analysis in a web browser and across programming languages and hardware architectures
tycho-kirchner/shournal
Log shell-commands and used files. Snapshot executed scripts. Fully automatic.
nanxstats/liftr
🐳 Containerize R Markdown documents for continuous reproducibility
SciLifeLab/Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
alan-turing-institute/TCPDBench
The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data
everware/everware
Everware is about re-useable science, it allows people to jump right in to your research code.
deanmarchiori/analysis-flow
Data Analysis Workflows & Reproducibility Learning Resources
mgalardini/pyseer
SEER, reimplemented in python 🐍🔮
commontk/dcmjs
dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).
VisTrails/VisTrails
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
I2PC/scipion
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
faroit/reproducible-audio-research
List of Reproducible Audio Research Papers
Kaixhin/FGMachine
Future Gadget Machine
geoscixyz/em
Electromagnetic methods in geophysics - open educational resources.
nuest/ten-simple-rules-dockerfiles
Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science
fmalmeida/MpGAP
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
cernanalysispreservation/analysispreservation.cern.ch
Source code for the CERN Analysis Preservation portal
rostools/prodigenr
Project directory generator R package
ecoinfAEET/Reproducibilidad
Reproducible Science: what, why, how
empiricalci/emp
:microscope: Empirical CLI
opengeophysics/testipynb
unit-testing for a collection of jupyter notebooks using nbconvert
calekochenour/remote-sensing-textbook
Textbook that provides JavaScript and Python code to create open reproducible remote sensing analyses and workflows in Google Earth Engine.
alapo/Literate-Programming
This is the repository for the Literate Programming Workshop
brainhack-school2020/abide-fmri
Repository for the Brainhack School 2020 team working with fMRI and ABIDE data to train machine learning models.