microbiomedata/nmdc_notebooks

Issues

• Link Checker Report

  #98 opened a month ago by github-actions
  1

• Modularize Python API wrapper functions

  #97 opened a month ago by bmeluch
  0

• Translate functional enrichment analysis notebook into R

  #96 opened a month ago by bmeluch
  0

• Create notebook that performs functional enrichment analysis on a set of proteomics samples

  #95 opened a month ago by bmeluch
  0

• Translate protein functional annotation notebook into R

  #94 opened a month ago by bmeluch
  0

• Create a notebook exploring functional annotations in a single proteomics sample (Python)

  #93 opened a month ago by bmeluch
  0

• Translate omics data integration notebook into Python

  #92 opened a month ago by bmeluch
  0

• Create notebook integrating 2 or more omics types (R)

  #91 opened a month ago by bmeluch
  0

• Modularize R API wrapper functions

  #90 opened a month ago by bmeluch
  0

• Link Checker Report

  #88 opened a month ago by github-actions
  1

• Link Checker Report

  #87 opened 2 months ago by github-actions
  1

• Link Checker Report

  #86 opened 2 months ago by github-actions
  1

• Link Checker Report

  #85 opened 2 months ago by github-actions
  1

• Link Checker Report

  #83 opened 2 months ago by github-actions
  1

• Link Checker Report

  #82 opened 3 months ago by github-actions
  1

• Link Checker Report

  #79 opened 3 months ago by github-actions
  1

• Link Checker Report

  #78 opened 3 months ago by github-actions
  1

• Add new NOM notebook links to main README

  #76 opened 3 months ago by bmeluch
  0

• Create R notebook to explore processed NOM data

  #34 opened 3 months ago by kheal
  0

• Create python notebook to explore processed data for a second 'omics data type

  #33 opened 3 months ago by kheal
  0

• Link Checker Report

  #73 opened 3 months ago by github-actions
  0

• Link Checker Report

  #75 opened 3 months ago by github-actions
  1

• [BUG] github workflow fails with "not valid yet links"

  #71 opened 3 months ago by kheal
  0

• Link Checker Report

  #70 opened 3 months ago by github-actions
  1

• Link Checker Report

  #66 opened 4 months ago by github-actions
  1

• [FEATURE REQUEST] Implement github actions

  #55 opened 5 months ago by kheal
  1

• Move python API functions to separate py script and source

  #56 opened 5 months ago by samobermiller
  1

• Link Checker Report

  #64 opened 5 months ago by github-actions
  1

• Implement Github action that tests all notebooks on PR and once per week

  #62 opened 5 months ago by kheal
  0

• Implement Github action that checks that all urls resolve (should trigger on PR)

  #59 opened 5 months ago by kheal
  0

• Implement Github Versioning and Releases

  #37 opened 6 months ago by brynnz22
  1

• [BUG] Need to update all links in READMEs to reflect up-to-date repo loction

  #52 opened 6 months ago by kheal
  0

• Upgrade package versions in `renv` to resolve gcc errors during environment setup on Ubuntu

  #50 opened 6 months ago by bmeluch
  3

• Create R-based notebook to explore taxonomy

  #32 opened 6 months ago by kheal
  2

• [BUG] Typo in CONTRIBUTING.md

  #48 opened 6 months ago by kheal
  0

• `dill` required in multiple notebooks but not stated in dependencies

  #27 opened 6 months ago by turbomam
  1

• [BUG] Broken link to Contributing.md on the Readme

  #44 opened 7 months ago by kheal
  0

• Add repo-level documentation

  #39 opened 7 months ago by kheal
  1

• Add notebook using sparql-dataframe library in python

  #31 opened 8 months ago by turbomam
  3

• Defensive programming/decrease assumptions: Try/catch for `KeyError: 'geo_loc_name'`

  #28 opened 8 months ago by turbomam
  0

• statsmodels required for bioscales.ipynb

  #26 opened 9 months ago by turbomam
  0

• Add Notebook for Contig-Soil Taxonomy Question

  #8 opened a year ago by brynnz22
  1

• Brainstorm and create new notebook that only uses Biosample endpoint ahead of Dec. 5 NEON meeting

  #9 opened a year ago by brynnz22
  1

• Add Readme for Bioscales

  #18 opened a year ago by brynnz22
  0

• Rename `.txt` file to `.txt.js` to enable syntax highlighting

  #20 opened a year ago by eecavanna
  3

• Add Overview section at top of main Readme

  #16 opened a year ago by brynnz22
  0

• Add R notebook for exploring bioscales metadata

  #17 opened a year ago by kheal
  0

• Pull out biosample type from NEON pH notebooks

  #11 opened a year ago by brynnz22
  1

• Cull dependencies

  #6 opened a year ago by kheal
  0

• Add links for Google Colab for jupyter notebooks

  #7 opened a year ago by kheal
  0