Pinned Repositories
MetabolicAtlas
Open source genome-scale metabolic models of human and model animals
standard-GEM
The standard for open-source GEMs on GitHub
biochem4j
biochem4j: integrated and extensible biochemical knowledge through graph databases
biohackathon-projects-2024
Project code for BioHackathon Europe 2024.
bioschemas.github.io
Files for the Bioschemas website.
bioschemas_sources
A list of sources for TeSS to scrape for relevant Bioschemas-marked-up resources
CKG
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
GECKO
Toolbox for including enzyme constraints on a genome-scale model.
Human-GEM
The generic genome-scale metabolic model of Homo sapiens
yeast-GEM
The consensus GEM for Saccharomyces cerevisiae
mihai-sysbio's Repositories
mihai-sysbio/biochem4j
biochem4j: integrated and extensible biochemical knowledge through graph databases
mihai-sysbio/biohackathon-projects-2024
Project code for BioHackathon Europe 2024.
mihai-sysbio/bioschemas.github.io
Files for the Bioschemas website.
mihai-sysbio/bioschemas_sources
A list of sources for TeSS to scrape for relevant Bioschemas-marked-up resources
mihai-sysbio/CKG
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
mihai-sysbio/FBCModelTests.jl
Tests for constraint-based metabolic models
mihai-sysbio/github-readme-stats
:zap: Dynamically generated stats for your github readmes
mihai-sysbio/KMG060-Systems-Biology-course
KMG060 Systems Biology course - repo for students
mihai-sysbio/masymos-core
MaSyMoS Core - create and query the DB
mihai-sysbio/masymos-docker
Repository containing or linking to all resources necessary to build a fully featured MaSyMoS Docker Image
mihai-sysbio/masymos-morre
web server interface
mihai-sysbio/Metabopolis
Biological Pathway Visualization
mihai-sysbio/mihai-sysbio
mihai-sysbio/research-software-ecosystem.github.io
Research Software Ecosystem
mihai-sysbio/sms6012_CZIomicsint
mihai-sysbio/synbiochem-py
Core python modules for SYNBIOCHEM.