Pinned Repositories
make_SILVA_db
General procedure for making QIIME 2 compatible SILVA reference files
Misc_Code
Simple and crude scripts that I've written for my own work that may be of help to others with similar tasks
q2-iqtree2
A full-featured IQ-TREE 2 plugin for QIIME 2.
RESCRIPt
REference Sequence annotation and CuRatIon Pipeline
mikerobeson's Repositories
mikerobeson/make_SILVA_db
General procedure for making QIIME 2 compatible SILVA reference files
mikerobeson/Misc_Code
Simple and crude scripts that I've written for my own work that may be of help to others with similar tasks
mikerobeson/q2-iqtree2
A full-featured IQ-TREE 2 plugin for QIIME 2.
mikerobeson/RESCRIPt
REference Sequence annotation and CuRatIon Pipeline
mikerobeson/db-benchmarks-2021
Database benchmarks using RESCRIPt
mikerobeson/docs
Source repository for https://docs.qiime2.org
mikerobeson/Feature-Selection-Qiime2
This repository describes the methods used to test different sci-kit learn feature selection methods as part of Qiime2 q2-classifier.
mikerobeson/find_differential_primers
My fork of 'find_differential_primers'. Scripts to aid the design of differential primers for diagnostic PCR.
mikerobeson/proteoDA
mikerobeson/pycogent
My fork of 'PyCogent' : Official repository for software and unit tests
mikerobeson/q2-alignment
Support for multiple sequence alignment in QIIME 2.
mikerobeson/q2-assembly
QIIME 2 plugin for (meta)genome assembly.
mikerobeson/q2-phylogeny
Phylogenetic reconstruction, and operations on phylogenetic trees.
mikerobeson/q2-sidle
A QIIME 2 implementation of SMURF
mikerobeson/q2-sourmash
Qiime2 Sourmash Plugin
mikerobeson/q2-types
Definitions of common QIIME 2 types.
mikerobeson/qiime
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests