mil2041
Postdoc at MSKCC studying cancer systems biology.
Memorial Sloan Kettering Cancer CenterNew York City
Pinned Repositories
2020_Wilk_COVID
Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"
ABIS
academic_writing
academic writing
ADAM
Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
Aneuploidy_dependencies
scripts for plots
AutoGeneS
CNCDatabase
A full stack web app for querying cancer driver evidences curated from literature
CNCDriver
Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
CompositeDriver
Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
netboxr
An R package to mark functional modules in the network analysis using data from pathwayCommons
mil2041's Repositories
mil2041/ImmuneResistance
This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".
mil2041/pan-meyers-et-al
Code to reproduce analyses and figures from Pan, Meyers, et al.
mil2041/Immunophenogram
mil2041/BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
mil2041/bms038_analysis
Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization
mil2041/pancanmet_analysis
Software and analysis of metabolism studies across multiple cancer types
mil2041/Mutation-burden-of-Pan-cancer
TCGA data (downloaded from cBioportal) was analyzed to summarize mutation burden in pan-cancers (totally 31 cancer types), ggplot2 was utilized to plot these results in alphabetic order.
mil2041/Kaggle-House-Prices-Advanced-Regression-Techniques
Udacity capstone project: Kaggle competition on house prices prediction using advanced regression techniques
mil2041/data.table.examples
mil2041/neuralart_tensorflow
Implementation of "A Neural Algorithm of Artistic Style" by Tensorflow
mil2041/professional-cuda-c-programming
mil2041/FORGE
This project develops the program FORGE. It allows to calculate gene p-values from Genome-Wide Association Data using multivariate methods. The gene-level statistics can be used for pathway or other system biology analyses (check out sister project for additional on pathway analysis with GWAS data: https://github.com/inti/GeneSetAnalysis/wiki). Check our Wiki for more details