mil2041

Postdoc at MSKCC studying cancer systems biology.

Memorial Sloan Kettering Cancer CenterNew York City

Pinned Repositories

2020_Wilk_COVID
Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"
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ABIS
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academic_writing
academic writing
0 2 00
ADAM
Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
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Aneuploidy_dependencies
scripts for plots
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AutoGeneS
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CNCDatabase
A full stack web app for querying cancer driver evidences curated from literature
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CNCDriver
Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
Language:R6 3 26
CompositeDriver
Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
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netboxr
An R package to mark functional modules in the network analysis using data from pathwayCommons
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mil2041's Repositories

mil2041/netboxr
An R package to mark functional modules in the network analysis using data from pathwayCommons
Language:HTML3 4 355
mil2041/CNCDatabase
A full stack web app for querying cancer driver evidences curated from literature
Language:JavaScript1 2 40
mil2041/awesome-deep-learning-single-cell-papers
0 0
mil2041/Awesome-Foundation-Models-in-Medical-Imaging
A curated list of foundation models for vision and language tasks in medical imaging
mil2041/Awesome-Information-Bottleneck
This is a curated list for Information Bottleneck Principle, in memory of Professor Naftali Tishby.
mil2041/awesome-kan
A comprehensive collection of KAN(Kolmogorov-Arnold Network)-related resources, including libraries, projects, tutorials, papers, and more, for researchers and developers in the Kolmogorov-Arnold Network field.
0 0
mil2041/Awesome-MIM-1
Awesome List of Masked Image Modeling (MIM) Papers for Self-supervised Visual Representation Learning
mil2041/awesome-scalability
The Patterns of Scalable, Reliable, and Performant Large-Scale Systems
mil2041/bayestme
BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data
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mil2041/CellSeg
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mil2041/computational-biology-conferences
curated list of computational biology conferences
2 0
mil2041/DinoBloom
Blood Cell Foundation Model based on DINOv2
mil2041/dinov2-finetune
Finetuning DINOv2 (https://github.com/facebookresearch/dinov2) on your own dataset
mil2041/FR-Perturb
Factorize-Recover for Perturb-seq analysis (FR-Perturb)
mil2041/hd_wsi
mil2041/HiFiAlignmentTool
HiFi Image Processing Pipeline
mil2041/Histopathology-Datasets
Ressources of histopathology datasets
mil2041/IMC-IF
Dual-modality imaging of immunofluorescence and imaging mass cytometry for high-resolution whole slide imaging with accurate single-cell segmentation
mil2041/IMCDataAnalysis
R based workflow for multiplexed imaging data
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mil2041/MultimodalPathologySearch
mil2041/nichenetr
NicheNet: predict active ligand-target links between interacting cells
mil2041/Nuc2Vec
mil2041/Pan-Cancer-Nuclei-Instance-Segmentation
Instance Segmentation of 5 Different Cancer Nuclei Across 19 Unique Tissue Types
Language:Jupyter Notebook0 0
mil2041/posterior-collapse-list
A curated list of techniques to avoid posterior collapse
mil2041/python-bioimage-analysis-tutorial
The new and improved 2018 version of the EMBL Python BioImage Analysis Tutorial. Now finally in python 3!
Language:Jupyter Notebook0 0
mil2041/sc-pert
Models and datasets for perturbational single-cell omics
mil2041/scDYMO
mil2041/scRNA-seq_notes
A list of scRNA-seq analysis tools
mil2041/scSpaMet
mil2041/Transformers-Tutorials
This repository contains demos I made with the Transformers library by HuggingFace.