Pinned Repositories
annotator
A Synapse annotations automation tool.
biolinkml
Biolink modeling language
biothings_schema.py
Python Package to view and analyze schemas defined in schema.org way
biothings_schema_discover_app
schematic
synapse-formation-templates
json/yaml templates of Synapse "projects"
synapseformation
Client for using Synapse Formation templates.
HTAN-Data-Ingress-Docs-ARCHIVED
A draft of the HTAN dataset ingress workflow - to share with tester teams and early adopters.
htan-portal
The HTAN Data Portal
data_curator
Data and metadata ingress app
milen-sage's Repositories
milen-sage/annotator
A Synapse annotations automation tool.
milen-sage/biolinkml
Biolink modeling language
milen-sage/biothings_schema.py
Python Package to view and analyze schemas defined in schema.org way
milen-sage/biothings_schema_discover_app
milen-sage/schematic
milen-sage/synapse-formation-templates
json/yaml templates of Synapse "projects"
milen-sage/synapseformation
Client for using Synapse Formation templates.
milen-sage/dccvalidator
Validate data, metadata, and annotations
milen-sage/discover_app_hack
milen-sage/discovery-app
The Data Discovery Engine project by the CD2H Data working-group
milen-sage/HTAN-Data-Ingress-Docs
A draft of the HTAN dataset ingress workflow - to share with tester teams and early adopters.
milen-sage/HTAN-data-pipeline1
milen-sage/htan-portal
The HTAN Data Portal
milen-sage/HTAN_data_curator
Data Ingest Shiny App
milen-sage/json-schema-test
milen-sage/minidream-challenge
milen-sage/minidream-r-env
Resources for setting up and managing an RStudio environment for interactive mini-DREAM activities
milen-sage/NF-drugx
milen-sage/nlp-deid-service-schemas
The NLP de-id API is a standard way to de-identify clinical notes
milen-sage/pson-cell-line-misc
Ad hoc data processing scripts for various PSON cell line studies - no documentation, no comments, quick and dirty
milen-sage/purl.obolibrary.org
A new system for managing OBO PURLs
milen-sage/sandbox-infra
Automation for the Sage AWS org-sagebase-sandbox account
milen-sage/sandbox-provisioner
An service to auto provision resources on AWS scicomp
milen-sage/schemas
Hosting CD2H data schemas in schema.org standard
milen-sage/schematic-test
milen-sage/scicomp-provisioner
An service to auto provision resources on AWS scicomp
milen-sage/synapseAnnotations
Sage Bionetworks derived standards for annotating content in Synapse.
milen-sage/synapsePythonClient
Programmatic interface to Synapse services for Python
milen-sage/syndccutils
code for managing data coordinating operations through Synapse
milen-sage/test
playground