/HTAN_data_curator

Data Ingest Shiny App

Primary LanguagePython

HTAN_Data_Curator

Data Ingest Shiny App

Currently shows a scRNAseq metadata template link on google sheets, then allows for a csv upload and validation based on that file.

To Use:

  • install R and associated Shiny libraries
  • pip install -r the requirements.txt in the htan-data-pipeline
  • pip install pygsheet
  • specify python 3.5+ (I used a conda env called py3.5 for reticulate, change based on your needs)
  • change paths to credentials.json, etc as needed